Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2110510..2110781 | Replicon | chromosome |
| Accession | NZ_CP090570 | ||
| Organism | Escherichia coli strain BY63 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2110640..2110743 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2110510..2110781 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZE53_RS10410 | 2107065..2107727 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| LZE53_RS10415 | 2107751..2108407 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LZE53_RS10420 | 2108509..2108739 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LZE53_RS10425 | 2108878..2109252 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LZE53_RS10430 | 2109256..2110128 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| LZE53_RS10435 | 2110141..2110482 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2110510..2110781 | - | 272 | - | - | Antitoxin |
| - | 2110640..2110743 | + | 104 | - | - | Toxin |
| LZE53_RS10440 | 2110878..2111534 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| LZE53_RS10445 | 2111535..2111726 | - | 192 | WP_001338167.1 | YebW family protein | - |
| LZE53_RS10450 | 2111831..2112067 | - | 237 | WP_001338166.1 | YebV family protein | - |
| LZE53_RS10455 | 2112185..2113624 | - | 1440 | WP_032187451.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T231236 NZ_CP090570:2110640-2110743 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT231236 NZ_CP090570:c2110781-2110510 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
