Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PumA-relB/COG3657-DUF971 |
| Location | 2256393..2256998 | Replicon | chromosome |
| Accession | NZ_CP090547 | ||
| Organism | Xylella fastidiosa subsp. sandyi strain OC8 | ||
Toxin (Protein)
| Gene name | PumA | Uniprot ID | B2I5N3 |
| Locus tag | LZ756_RS10930 | Protein ID | WP_004089252.1 |
| Coordinates | 2256393..2256689 (+) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | LZ756_RS10935 | Protein ID | WP_004089254.1 |
| Coordinates | 2256693..2256998 (+) | Length | 102 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ756_RS10895 (LZ756_10895) | 2252080..2252628 | + | 549 | WP_024749081.1 | DUF4065 domain-containing protein | - |
| LZ756_RS10900 (LZ756_10900) | 2252588..2253184 | + | 597 | WP_024749080.1 | hypothetical protein | - |
| LZ756_RS10905 (LZ756_10905) | 2253201..2253425 | + | 225 | WP_230577809.1 | hypothetical protein | - |
| LZ756_RS10910 (LZ756_10910) | 2253426..2254589 | - | 1164 | WP_020851649.1 | tail fiber protein | - |
| LZ756_RS10915 (LZ756_10915) | 2254593..2255153 | - | 561 | WP_020851650.1 | DUF2612 domain-containing protein | - |
| LZ756_RS10920 (LZ756_10920) | 2255150..2255653 | - | 504 | WP_234759328.1 | hypothetical protein | - |
| LZ756_RS10925 (LZ756_10925) | 2255632..2256294 | - | 663 | WP_234759329.1 | baseplate J/gp47 family protein | - |
| LZ756_RS10930 (LZ756_10930) | 2256393..2256689 | + | 297 | WP_004089252.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LZ756_RS10935 (LZ756_10935) | 2256693..2256998 | + | 306 | WP_004089254.1 | putative addiction module antidote protein | Antitoxin |
| LZ756_RS10940 (LZ756_10940) | 2257009..2257362 | - | 354 | WP_020851652.1 | hypothetical protein | - |
| LZ756_RS10945 (LZ756_10945) | 2257359..2258000 | - | 642 | WP_234759331.1 | Gp138 family membrane-puncturing spike protein | - |
| LZ756_RS10950 (LZ756_10950) | 2257997..2258827 | - | 831 | WP_042836628.1 | hypothetical protein | - |
| LZ756_RS10955 (LZ756_10955) | 2258824..2259141 | - | 318 | WP_020851655.1 | hypothetical protein | - |
| LZ756_RS10960 (LZ756_10960) | 2259141..2259911 | - | 771 | WP_024749165.1 | hypothetical protein | - |
| LZ756_RS10965 (LZ756_10965) | 2259969..2260295 | + | 327 | WP_004091353.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LZ756_RS10970 (LZ756_10970) | 2260292..2260573 | + | 282 | WP_004091355.1 | XRE family transcriptional regulator | - |
| LZ756_RS10975 (LZ756_10975) | 2260632..2260925 | - | 294 | Protein_2156 | hypothetical protein | - |
| LZ756_RS10980 (LZ756_10980) | 2260873..2261181 | - | 309 | WP_234759414.1 | hypothetical protein | - |
| LZ756_RS10985 (LZ756_10985) | 2261236..2261535 | + | 300 | WP_024749166.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LZ756_RS10990 (LZ756_10990) | 2261539..2261847 | + | 309 | WP_004085003.1 | putative addiction module antidote protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2233047..2273605 | 40558 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 10790.57 Da Isoelectric Point: 10.0509
>T231178 WP_004089252.1 NZ_CP090547:2256393-2256689 [Xylella fastidiosa subsp. sandyi]
MVELIKTSTFDAWINSLRDRKAAARIQARLDRLALGNPGDVKPVGAGISEMRIDHGPGYRIYFMKHGAVLILLLCGGDKS
SQVRDIEQAKALAALWKD
MVELIKTSTFDAWINSLRDRKAAARIQARLDRLALGNPGDVKPVGAGISEMRIDHGPGYRIYFMKHGAVLILLLCGGDKS
SQVRDIEQAKALAALWKD
Download Length: 297 bp
>T231178 NZ_CP126106:282426-282776 [Peribacillus simplex]
ATTGTTGTTAAGCGTGGTGACGTATACTTCGCAGACCTTTCCCCGGTGGTTGGTTCAGAGCAGGGTGGGACCCGTCCGGT
ACTAATTTTACAAAACGATATTGGTAATCGCTTTAGTCCGACTGTGATCGTGGCAGCCATTACAGCTCAAATTCAAAAAG
CGAAATTGCCTACACATGTTGAGATTAATGCAAAAAAATACGGATTCGAGCGAGATTCCGTCATTTTATTAGAACAGATC
CGGACAATTGATAAGCAGCGTTTAACTGATAAAATTACGCATCTTGACGAACCGATGATGCAAAAAGTCAATGAAGCTTT
GCAAATTAGTTTAGGCCTCATTGAGTTTTAA
ATTGTTGTTAAGCGTGGTGACGTATACTTCGCAGACCTTTCCCCGGTGGTTGGTTCAGAGCAGGGTGGGACCCGTCCGGT
ACTAATTTTACAAAACGATATTGGTAATCGCTTTAGTCCGACTGTGATCGTGGCAGCCATTACAGCTCAAATTCAAAAAG
CGAAATTGCCTACACATGTTGAGATTAATGCAAAAAAATACGGATTCGAGCGAGATTCCGTCATTTTATTAGAACAGATC
CGGACAATTGATAAGCAGCGTTTAACTGATAAAATTACGCATCTTGACGAACCGATGATGCAAAAAGTCAATGAAGCTTT
GCAAATTAGTTTAGGCCTCATTGAGTTTTAA
Antitoxin
Download Length: 102 a.a. Molecular weight: 10983.37 Da Isoelectric Point: 5.0941
>AT231178 WP_004089254.1 NZ_CP090547:2256693-2256998 [Xylella fastidiosa subsp. sandyi]
MNNETFSRYDTADYLKTEEDIAAYMEAVMEEGGRDNPAFIARALGAVARARNLSQLARDVGMSRQGLDKALSNDGNPSFS
TILKVAKALGLRMSFTPSSMS
MNNETFSRYDTADYLKTEEDIAAYMEAVMEEGGRDNPAFIARALGAVARARNLSQLARDVGMSRQGLDKALSNDGNPSFS
TILKVAKALGLRMSFTPSSMS
Download Length: 306 bp
>AT231178 NZ_CP126106:282137-282418 [Peribacillus simplex]
GTGTCTGAATCCAGCGCAACGAGAGAGATATTAATTCGATTACCTCAAAATTTTTTAACAGAGTTAGATGGGTATGCGAG
TGAGGAAAATGTGAATCGCAGTGAATTTATTTATCGTGCCACAAAAATGTATCTTCGCGAACGTAAAAAGAAAGAGTTTC
GTGAATCGATGAAACGCGGTTATATTGAAATGGCGGCCATTAATTTAACGATTGCTTCTGAAGCCTTCCAGGCTGAATTC
GAGGCTGGTCATTGCGTTGAACGATTAGTTAGCGGAGGCTGA
GTGTCTGAATCCAGCGCAACGAGAGAGATATTAATTCGATTACCTCAAAATTTTTTAACAGAGTTAGATGGGTATGCGAG
TGAGGAAAATGTGAATCGCAGTGAATTTATTTATCGTGCCACAAAAATGTATCTTCGCGAACGTAAAAAGAAAGAGTTTC
GTGAATCGATGAAACGCGGTTATATTGAAATGGCGGCCATTAATTTAACGATTGCTTCTGAAGCCTTCCAGGCTGAATTC
GAGGCTGGTCATTGCGTTGAACGATTAGTTAGCGGAGGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|