Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/- |
| Location | 1955001..1955587 | Replicon | chromosome |
| Accession | NZ_CP090547 | ||
| Organism | Xylella fastidiosa subsp. sandyi strain OC8 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | LZ756_RS09395 | Protein ID | WP_080702508.1 |
| Coordinates | 1955333..1955587 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | B2I6C9 |
| Locus tag | LZ756_RS09390 | Protein ID | WP_004085025.1 |
| Coordinates | 1955001..1955336 (-) | Length | 112 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ756_RS09360 (LZ756_09360) | 1950931..1951815 | - | 885 | WP_051404211.1 | iron-sulfur cluster carrier protein ApbC | - |
| LZ756_RS09365 (LZ756_09365) | 1952280..1953053 | + | 774 | WP_020852623.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| LZ756_RS09370 (LZ756_09370) | 1953050..1953532 | + | 483 | WP_020852624.1 | low molecular weight protein-tyrosine-phosphatase | - |
| LZ756_RS09375 (LZ756_09375) | 1953501..1953803 | - | 303 | WP_020852625.1 | site-specific DNA-methyltransferase | - |
| LZ756_RS09380 (LZ756_09380) | 1954230..1954511 | + | 282 | WP_020852626.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LZ756_RS09385 (LZ756_09385) | 1954522..1954821 | + | 300 | WP_020852627.1 | HigA family addiction module antitoxin | - |
| LZ756_RS09390 (LZ756_09390) | 1955001..1955336 | - | 336 | WP_004085025.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| LZ756_RS09395 (LZ756_09395) | 1955333..1955587 | - | 255 | WP_080702508.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| LZ756_RS09400 (LZ756_09400) | 1955640..1956338 | - | 699 | WP_020852371.1 | phage-related protein | - |
| LZ756_RS09405 (LZ756_09405) | 1956467..1956924 | - | 458 | Protein_1843 | hypothetical protein | - |
| LZ756_RS09410 (LZ756_09410) | 1956921..1957685 | - | 765 | WP_020852629.1 | hypothetical protein | - |
| LZ756_RS09415 (LZ756_09415) | 1957591..1958564 | - | 974 | Protein_1845 | DUF1376 domain-containing protein | - |
| LZ756_RS09420 (LZ756_09420) | 1958666..1959256 | + | 591 | WP_020852632.1 | recombinase family protein | - |
| LZ756_RS09425 (LZ756_09425) | 1959313..1960101 | - | 789 | WP_020852633.1 | alpha/beta fold hydrolase | - |
| LZ756_RS09430 (LZ756_09430) | 1960408..1960572 | + | 165 | WP_230577906.1 | DUF4158 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1936904..1959256 | 22352 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9661.19 Da Isoelectric Point: 11.5325
>T231176 WP_080702508.1 NZ_CP090547:c1955587-1955333 [Xylella fastidiosa subsp. sandyi]
MKRKHAKTLSAIYTRPVSANIQWRHIEALFVELGAKVEEREGSRMLVRLFGERRIFHRPHPSPNTDKGAVESIRAWLKSN
GVTP
MKRKHAKTLSAIYTRPVSANIQWRHIEALFVELGAKVEEREGSRMLVRLFGERRIFHRPHPSPNTDKGAVESIRAWLKSN
GVTP
Download Length: 255 bp
>T231176 NZ_CP126105:490253-490603 [Bacillus velezensis]
TTGATTGTAAAGCGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGCGTACGCCCGGT
TTTAGTGATCCAAAATGATATCGGAAATCGCTTTAGCCCGACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGATTAACGGATAAAATAACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCTT
GCAAATCAGTTTGGCACTCATTGATTTTTAG
TTGATTGTAAAGCGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGCGTACGCCCGGT
TTTAGTGATCCAAAATGATATCGGAAATCGCTTTAGCCCGACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGATTAACGGATAAAATAACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCTT
GCAAATCAGTTTGGCACTCATTGATTTTTAG
Antitoxin
Download Length: 112 a.a. Molecular weight: 12324.07 Da Isoelectric Point: 5.6556
>AT231176 WP_004085025.1 NZ_CP090547:c1955336-1955001 [Xylella fastidiosa subsp. sandyi]
MKNIMTIESFKAIITYDPEIDMFRGEFVGINGGADFYAKDLKGLRREGAISLKVFLEACKEDSVEPRKCYSGKFNARISP
ELHALASEAAAAQGISLNQFVEQAIQHEVHT
MKNIMTIESFKAIITYDPEIDMFRGEFVGINGGADFYAKDLKGLRREGAISLKVFLEACKEDSVEPRKCYSGKFNARISP
ELHALASEAAAAQGISLNQFVEQAIQHEVHT
Download Length: 336 bp
>AT231176 NZ_CP126105:489966-490247 [Bacillus velezensis]
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCTGAAAACTTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCGTATGTCAGCGAACGGACAACTCGCCATAACC
GTGATTTGATGAGACGCGGGTATATGGAAATGGCGAAAATCAACTTGAATATCTCTTCTGAGGCTCACTATGCTGAGTGC
GAAGCAGAAACGACCGTTGAGCGCTTAGTCAGCGGAGGATAA
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCTGAAAACTTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCGTATGTCAGCGAACGGACAACTCGCCATAACC
GTGATTTGATGAGACGCGGGTATATGGAAATGGCGAAAATCAACTTGAATATCTCTTCTGAGGCTCACTATGCTGAGTGC
GAAGCAGAAACGACCGTTGAGCGCTTAGTCAGCGGAGGATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|