Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/upstrm_HI1419-dnstrm_HI1420 |
| Location | 1901274..1901885 | Replicon | chromosome |
| Accession | NZ_CP090511 | ||
| Organism | Xylella fastidiosa subsp. multiplex strain Oak 35874 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LZ754_RS08915 | Protein ID | WP_234499746.1 |
| Coordinates | 1901274..1901573 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q879U0 |
| Locus tag | LZ754_RS08920 | Protein ID | WP_004085003.1 |
| Coordinates | 1901577..1901885 (+) | Length | 103 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ754_RS08875 (LZ754_08875) | 1896380..1897525 | - | 1146 | WP_234499695.1 | baseplate J/gp47 family protein | - |
| LZ754_RS08880 (LZ754_08880) | 1897636..1897932 | + | 297 | WP_154414943.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LZ754_RS08885 (LZ754_08885) | 1897935..1898228 | + | 294 | WP_004085592.1 | putative addiction module antidote protein | - |
| LZ754_RS08890 (LZ754_08890) | 1898284..1898637 | - | 354 | WP_020851652.1 | hypothetical protein | - |
| LZ754_RS08895 (LZ754_08895) | 1898634..1899275 | - | 642 | WP_040123250.1 | Gp138 family membrane-puncturing spike protein | - |
| LZ754_RS08900 (LZ754_08900) | 1899272..1900102 | - | 831 | WP_027700631.1 | hypothetical protein | - |
| LZ754_RS08905 (LZ754_08905) | 1900099..1900416 | - | 318 | WP_004085001.1 | hypothetical protein | - |
| LZ754_RS08910 (LZ754_08910) | 1900416..1901186 | - | 771 | WP_234499745.1 | hypothetical protein | - |
| LZ754_RS08915 (LZ754_08915) | 1901274..1901573 | + | 300 | WP_234499746.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LZ754_RS08920 (LZ754_08920) | 1901577..1901885 | + | 309 | WP_004085003.1 | putative addiction module antidote protein | Antitoxin |
| LZ754_RS08925 (LZ754_08925) | 1901959..1902870 | - | 912 | WP_234499698.1 | hypothetical protein | - |
| LZ754_RS08930 (LZ754_08930) | 1902843..1903751 | - | 909 | WP_234499747.1 | phage tail tape measure protein | - |
| LZ754_RS08935 (LZ754_08935) | 1903995..1904417 | - | 423 | WP_234499748.1 | putative phage tail assembly chaperone | - |
| LZ754_RS08940 (LZ754_08940) | 1904414..1904851 | - | 438 | WP_234499749.1 | DUF3277 family protein | - |
| LZ754_RS08945 (LZ754_08945) | 1904861..1906357 | - | 1497 | WP_038230289.1 | DUF3383 domain-containing protein | - |
| LZ754_RS08950 (LZ754_08950) | 1906358..1906762 | - | 405 | WP_230577601.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1886694..1943810 | 57116 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11394.17 Da Isoelectric Point: 10.3861
>T230968 WP_234499746.1 NZ_CP090511:1901274-1901573 [Xylella fastidiosa subsp. multiplex]
MTYTVKRLEGFSDWLKGLKDGLARQRLIKRLRKVQLGNFGDVQPVGEGVFEMREHFGPGWRMYYVQRGSFLIVMLGGGDK
STQQSDIRRTIELAKSLED
MTYTVKRLEGFSDWLKGLKDGLARQRLIKRLRKVQLGNFGDVQPVGEGVFEMREHFGPGWRMYYVQRGSFLIVMLGGGDK
STQQSDIRRTIELAKSLED
Download Length: 300 bp
>T230968 NZ_CP125734:c4725400-4725116 [Klebsiella pneumoniae]
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTATGCAGAATCTGCGAATTGAGTCGGCCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTATGCAGAATCTGCGAATTGAGTCGGCCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA
Antitoxin
Download Length: 103 a.a. Molecular weight: 11060.61 Da Isoelectric Point: 4.6535
>AT230968 WP_004085003.1 NZ_CP090511:1901577-1901885 [Xylella fastidiosa subsp. multiplex]
VTITKKINVSELPEFDAAEYLNSEEEVAAYLTAVLEENDPALLAAALGDIARSRGMSQIAKDSGITREALYKALRPGSEP
RFDTISRVCTALGIRLVAQPMH
VTITKKINVSELPEFDAAEYLNSEEEVAAYLTAVLEENDPALLAAALGDIARSRGMSQIAKDSGITREALYKALRPGSEP
RFDTISRVCTALGIRLVAQPMH
Download Length: 309 bp
>AT230968 NZ_CP125734:c4725632-4725390 [Klebsiella pneumoniae]
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|