Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
| Location | 1660640..1661162 | Replicon | chromosome |
| Accession | NZ_CP090510 | ||
| Organism | Xylella fastidiosa subsp. multiplex strain LA-Y3C | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | A0A060HA53 |
| Locus tag | LZ759_RS07410 | Protein ID | WP_038229230.1 |
| Coordinates | 1660875..1661162 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A060HDF9 |
| Locus tag | LZ759_RS07405 | Protein ID | WP_004085758.1 |
| Coordinates | 1660640..1660882 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ759_RS07370 (LZ759_07370) | 1655723..1656466 | + | 744 | WP_225621865.1 | polysaccharide deacetylase family protein | - |
| LZ759_RS07375 (LZ759_07375) | 1657110..1657301 | - | 192 | WP_027700471.1 | hypothetical protein | - |
| LZ759_RS07380 (LZ759_07380) | 1657719..1658138 | - | 420 | WP_057683757.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| LZ759_RS07385 (LZ759_07385) | 1658138..1658377 | - | 240 | WP_004085761.1 | ribbon-helix-helix domain-containing protein | - |
| LZ759_RS07390 (LZ759_07390) | 1658761..1659795 | + | 1035 | WP_071869505.1 | hypothetical protein | - |
| LZ759_RS07395 (LZ759_07395) | 1659919..1660170 | + | 252 | Protein_1448 | conjugal transfer protein TrbJ | - |
| LZ759_RS07400 (LZ759_07400) | 1660123..1660350 | - | 228 | WP_233341840.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| LZ759_RS07405 (LZ759_07405) | 1660640..1660882 | + | 243 | WP_004085758.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| LZ759_RS07410 (LZ759_07410) | 1660875..1661162 | + | 288 | WP_038229230.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LZ759_RS07415 (LZ759_07415) | 1661250..1661816 | + | 567 | WP_071869506.1 | recombinase family protein | - |
| LZ759_RS07420 (LZ759_07420) | 1661833..1663065 | - | 1233 | WP_140160997.1 | RNA-guided endonuclease TnpB family protein | - |
| LZ759_RS07425 (LZ759_07425) | 1663059..1663685 | - | 627 | WP_140160998.1 | IS607 family transposase | - |
| LZ759_RS07430 (LZ759_07430) | 1663915..1665189 | - | 1275 | WP_012337985.1 | pyridoxal phosphate-dependent aminotransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1657316..1680436 | 23120 | |
| - | flank | IS/Tn | - | - | 1661250..1661816 | 566 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11163.63 Da Isoelectric Point: 5.9570
>T230959 WP_038229230.1 NZ_CP090510:1660875-1661162 [Xylella fastidiosa subsp. multiplex]
MAKSYRLTPLAEADLEEIWFYTFRHWSIEQADSYHRSLVAVFEGLAAGTKQGCPSVLTDFNKYLCGSHVVYFMDYADHLD
IIRILHQRQDTERYL
MAKSYRLTPLAEADLEEIWFYTFRHWSIEQADSYHRSLVAVFEGLAAGTKQGCPSVLTDFNKYLCGSHVVYFMDYADHLD
IIRILHQRQDTERYL
Download Length: 288 bp
>T230959 NZ_CP125734:715572-716057 [Klebsiella pneumoniae]
ATGATCTCGGCACCAGAACCGCTTCATGCCGGGCATATTCTTACCCCGTTTTGCTGCGGTATAGATTCCATGGATCACTG
GCTGAAACAGCGGGCGATGAAAAATCAGGTTACTGGCGCATCCCGCACCTTTGTCTGCTGCGACGACGCGAAGGTGATGG
CTTACTACTCACTGGCTTCCAGCGCTGTGACGACAAATACTGCGCCGGGTCGTTTTCGCCGCAATATGCCTGACCCGATC
CCGGTTGTGGTACTGGGTCGTCTGGCGGTGGATAAATCACTACATGGGAAAGGTGTCGGGCGGGCGCTGGTACGTGATGC
CGGGCTGCGTGTGATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCACGGG
ATTTTTACCTGCGGGTGGGGTTTGAGCCGTCGCCGATGGATTCGATGATGTTGATGGTGACGTTGAGGGATTTGGTTAAT
GCCTGA
ATGATCTCGGCACCAGAACCGCTTCATGCCGGGCATATTCTTACCCCGTTTTGCTGCGGTATAGATTCCATGGATCACTG
GCTGAAACAGCGGGCGATGAAAAATCAGGTTACTGGCGCATCCCGCACCTTTGTCTGCTGCGACGACGCGAAGGTGATGG
CTTACTACTCACTGGCTTCCAGCGCTGTGACGACAAATACTGCGCCGGGTCGTTTTCGCCGCAATATGCCTGACCCGATC
CCGGTTGTGGTACTGGGTCGTCTGGCGGTGGATAAATCACTACATGGGAAAGGTGTCGGGCGGGCGCTGGTACGTGATGC
CGGGCTGCGTGTGATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCACGGG
ATTTTTACCTGCGGGTGGGGTTTGAGCCGTCGCCGATGGATTCGATGATGTTGATGGTGACGTTGAGGGATTTGGTTAAT
GCCTGA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8774.77 Da Isoelectric Point: 6.9881
>AT230959 WP_004085758.1 NZ_CP090510:1660640-1660882 [Xylella fastidiosa subsp. multiplex]
MSRNTSVALGPHFTSFIDAQVQGGRYGTASDVVRAGLRLLEEHETKVKALQDALNVGHQSGEPRPFDSEVFLSRMHTQHG
MSRNTSVALGPHFTSFIDAQVQGGRYGTASDVVRAGLRLLEEHETKVKALQDALNVGHQSGEPRPFDSEVFLSRMHTQHG
Download Length: 243 bp
>AT230959 NZ_CP125734:715282-715575 [Klebsiella pneumoniae]
ATGCCAGCCGCAAACAGCATGTCCATAAAACGCGAAACGTTAAATCTGCGCATTAAACCTGCCGAACGCGATCTTATTGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAGGCCGCCCGCGCTGCCGCTGAGGAAGCGCTGA
TTGAGCAACGCATCATTATGGCCGATCCGCAGGCTTATCAGGAATTTCTCGCTCGTCTGGATCAGGCTCCTGCACCTAAT
GCCGCACTGCGTAAAACTATGCAGACCCCTGCGCCGTGGGAACAGGAAGAATGA
ATGCCAGCCGCAAACAGCATGTCCATAAAACGCGAAACGTTAAATCTGCGCATTAAACCTGCCGAACGCGATCTTATTGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAGGCCGCCCGCGCTGCCGCTGAGGAAGCGCTGA
TTGAGCAACGCATCATTATGGCCGATCCGCAGGCTTATCAGGAATTTCTCGCTCGTCTGGATCAGGCTCCTGCACCTAAT
GCCGCACTGCGTAAAACTATGCAGACCCCTGCGCCGTGGGAACAGGAAGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A060HA53 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A060HDF9 |