Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/- |
| Location | 970072..970658 | Replicon | chromosome |
| Accession | NZ_CP090506 | ||
| Organism | Xylella fastidiosa subsp. morus strain Riv19 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | LZ757_RS04500 | Protein ID | WP_038228269.1 |
| Coordinates | 970072..970326 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | B2I6C9 |
| Locus tag | LZ757_RS04505 | Protein ID | WP_004085025.1 |
| Coordinates | 970323..970658 (+) | Length | 112 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ757_RS04465 (LZ757_04465) | 965779..966384 | - | 606 | WP_040123201.1 | conjugal transfer protein TrbN | - |
| LZ757_RS04470 (LZ757_04470) | 966390..966764 | - | 375 | WP_040123200.1 | hypothetical protein | - |
| LZ757_RS04475 (LZ757_04475) | 966911..967165 | + | 255 | WP_040123199.1 | hypothetical protein | - |
| LZ757_RS04480 (LZ757_04480) | 967162..968064 | + | 903 | WP_234056418.1 | YdaU family protein | - |
| LZ757_RS04485 (LZ757_04485) | 968045..968734 | + | 690 | WP_038228265.1 | hypothetical protein | - |
| LZ757_RS04490 (LZ757_04490) | 968731..969192 | + | 462 | WP_234056374.1 | hypothetical protein | - |
| LZ757_RS04495 (LZ757_04495) | 969321..970019 | + | 699 | WP_038228267.1 | hypothetical protein | - |
| LZ757_RS04500 (LZ757_04500) | 970072..970326 | + | 255 | WP_038228269.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| LZ757_RS04505 (LZ757_04505) | 970323..970658 | + | 336 | WP_004085025.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| LZ757_RS04510 (LZ757_04510) | 970838..971137 | - | 300 | WP_004089519.1 | HigA family addiction module antitoxin | - |
| LZ757_RS04515 (LZ757_04515) | 971147..971428 | - | 282 | WP_011098058.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LZ757_RS04520 (LZ757_04520) | 971776..972490 | + | 715 | Protein_884 | site-specific DNA-methyltransferase | - |
| LZ757_RS04525 (LZ757_04525) | 972477..972941 | - | 465 | WP_011098056.1 | low molecular weight protein-tyrosine-phosphatase | - |
| LZ757_RS04530 (LZ757_04530) | 972938..973711 | - | 774 | WP_004089528.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| LZ757_RS04535 (LZ757_04535) | 974146..975057 | + | 912 | WP_230577717.1 | iron-sulfur cluster carrier protein ApbC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9679.16 Da Isoelectric Point: 11.2766
>T230928 WP_038228269.1 NZ_CP090506:970072-970326 [Xylella fastidiosa subsp. morus]
MKRKHAKTLSAIYTRPVSANIQWRDIEALFVELGAKVEEREGSRMLVRLFGERRIFHRPHPSHNTDKGAVESIRAWLKSN
GVTP
MKRKHAKTLSAIYTRPVSANIQWRDIEALFVELGAKVEEREGSRMLVRLFGERRIFHRPHPSHNTDKGAVESIRAWLKSN
GVTP
Download Length: 255 bp
>T230928 NZ_CP125717:c1242122-1241376 [Bacillus velezensis]
ATGCTTTTGTTTTTTCAGATCATGGTGTGGACGATGGCGGCCGCACTCATTTTATATGTGTACGCATCCTGGCGGTATGA
GGCAAAGGTGAAAGAAAAAATGTTTGCCATCCGTAAAACGTGGTATTTACTATTTGTACTGGGCTCCATGGTCTATTGGA
CATATGATCCTGAATCGCTCTTTGCCGCATGGAGACAATATTTGATTGTTGCCGTCTGCTTTGCCCTTATTGATGCGTTT
ATCTTTTTGAGCGCGTATATCAAAAAGCTCGCCGGCAATGAATTAGAGACGGATACGCGGGAAATTTTAGAAGAAAATAA
CGAAATGCTTCACTCCTATCTTGAAAAACTGAAAACCTATCAATATCTGTTGAAAAATGAACCGATCCATGTATATTATG
GAAGTACAGAAGCTTATGCGGAAGGCATCAGCAGACTGCTGGCCGCTTATGCCGAAAAAATGAATGTCACGGCTTCCTTG
TGCGACTATTCCGCACAATCGGATAAGGACCGCTTGACGGAGCATATGCCTGATGCGGCAGACGTTCAGTCCCGTCTTAA
CCGTAAAGACGTCTACTATGATCAAAAAGGCAGGCTTGTGCTTATTCCGTTTACAGTCCAGAACCGCCATTACGTGATCA
AACTCACGTCGGAAAACCTGTTGACGGAATTCGATTATTTGCTTTTCACATCGCTAACGAGCATTTATGATTTAATGCTG
CCAATAGAAGAGGAAGGTGACGGTTAA
ATGCTTTTGTTTTTTCAGATCATGGTGTGGACGATGGCGGCCGCACTCATTTTATATGTGTACGCATCCTGGCGGTATGA
GGCAAAGGTGAAAGAAAAAATGTTTGCCATCCGTAAAACGTGGTATTTACTATTTGTACTGGGCTCCATGGTCTATTGGA
CATATGATCCTGAATCGCTCTTTGCCGCATGGAGACAATATTTGATTGTTGCCGTCTGCTTTGCCCTTATTGATGCGTTT
ATCTTTTTGAGCGCGTATATCAAAAAGCTCGCCGGCAATGAATTAGAGACGGATACGCGGGAAATTTTAGAAGAAAATAA
CGAAATGCTTCACTCCTATCTTGAAAAACTGAAAACCTATCAATATCTGTTGAAAAATGAACCGATCCATGTATATTATG
GAAGTACAGAAGCTTATGCGGAAGGCATCAGCAGACTGCTGGCCGCTTATGCCGAAAAAATGAATGTCACGGCTTCCTTG
TGCGACTATTCCGCACAATCGGATAAGGACCGCTTGACGGAGCATATGCCTGATGCGGCAGACGTTCAGTCCCGTCTTAA
CCGTAAAGACGTCTACTATGATCAAAAAGGCAGGCTTGTGCTTATTCCGTTTACAGTCCAGAACCGCCATTACGTGATCA
AACTCACGTCGGAAAACCTGTTGACGGAATTCGATTATTTGCTTTTCACATCGCTAACGAGCATTTATGATTTAATGCTG
CCAATAGAAGAGGAAGGTGACGGTTAA
Antitoxin
Download Length: 112 a.a. Molecular weight: 12324.07 Da Isoelectric Point: 5.6556
>AT230928 WP_004085025.1 NZ_CP090506:970323-970658 [Xylella fastidiosa subsp. morus]
MKNIMTIESFKAIITYDPEIDMFRGEFVGINGGADFYAKDLKGLRREGAISLKVFLEACKEDSVEPRKCYSGKFNARISP
ELHALASEAAAAQGISLNQFVEQAIQHEVHT
MKNIMTIESFKAIITYDPEIDMFRGEFVGINGGADFYAKDLKGLRREGAISLKVFLEACKEDSVEPRKCYSGKFNARISP
ELHALASEAAAAQGISLNQFVEQAIQHEVHT
Download Length: 336 bp
>AT230928 NZ_CP125717:c1241375-1241205 [Bacillus velezensis]
ATGGAGCAGGCATTTCAAAACGGGCAGCCGGAACAAAGAGCGAAACCGTTCAAAATGTTTAAAAAACGTTCAATGACAAG
TATCGCAAGTTACCAGGTCAGCCCTCATACCGCCAGAATTTTCAAAGAAAACGAGCGGCTGATTGACAAGTATAAACAAA
AAAAAGCTTGA
ATGGAGCAGGCATTTCAAAACGGGCAGCCGGAACAAAGAGCGAAACCGTTCAAAATGTTTAAAAAACGTTCAATGACAAG
TATCGCAAGTTACCAGGTCAGCCCTCATACCGCCAGAATTTTCAAAGAAAACGAGCGGCTGATTGACAAGTATAAACAAA
AAAAAGCTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|