Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1755035..1755554 | Replicon | chromosome |
| Accession | NZ_CP090495 | ||
| Organism | Photobacterium damselae subsp. damselae strain AS-15-0759-2 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A7Y7QCC3 |
| Locus tag | IHC89_RS08220 | Protein ID | WP_068946750.1 |
| Coordinates | 1755035..1755319 (-) | Length | 95 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | IHC89_RS08225 | Protein ID | WP_197673587.1 |
| Coordinates | 1755309..1755554 (-) | Length | 82 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC89_RS08185 (IHC89_08185) | 1750536..1751324 | + | 789 | WP_237030931.1 | RecX family transcriptional regulator | - |
| IHC89_RS08190 (IHC89_08190) | 1751360..1751812 | - | 453 | WP_237030932.1 | N-acetyltransferase | - |
| IHC89_RS08195 (IHC89_08195) | 1751875..1752207 | - | 333 | WP_069531582.1 | DUF4377 domain-containing protein | - |
| IHC89_RS08200 (IHC89_08200) | 1752370..1752654 | + | 285 | WP_106261788.1 | damage-inducible protein J | - |
| IHC89_RS08205 (IHC89_08205) | 1752773..1753120 | - | 348 | WP_036763975.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| IHC89_RS08210 (IHC89_08210) | 1753135..1753872 | - | 738 | WP_005299667.1 | hydrogenase nickel incorporation protein HypB | - |
| IHC89_RS08215 (IHC89_08215) | 1754203..1754772 | + | 570 | WP_086366827.1 | hypothetical protein | - |
| IHC89_RS08220 (IHC89_08220) | 1755035..1755319 | - | 285 | WP_068946750.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| IHC89_RS08225 (IHC89_08225) | 1755309..1755554 | - | 246 | WP_197673587.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| IHC89_RS08230 (IHC89_08230) | 1755910..1756305 | - | 396 | WP_237030933.1 | hypothetical protein | - |
| IHC89_RS08235 (IHC89_08235) | 1756547..1757104 | - | 558 | WP_115059957.1 | heme utilization protein HutZ | - |
| IHC89_RS08240 (IHC89_08240) | 1757104..1757628 | - | 525 | WP_044175768.1 | heme utilization cystosolic carrier protein HutX | - |
| IHC89_RS08245 (IHC89_08245) | 1757682..1759073 | - | 1392 | WP_005299675.1 | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW | - |
| IHC89_RS08250 (IHC89_08250) | 1759470..1760228 | + | 759 | WP_005299677.1 | energy transducer TonB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | hcp1 / icmF/vasK / clpB/vasG / vasE / vasA / vipB/mglB / vipA/mglA | 1357153..1757104 | 399951 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 11147.24 Da Isoelectric Point: 10.6691
>T230904 WP_068946750.1 NZ_CP090495:c1755319-1755035 [Photobacterium damselae subsp. damselae]
VTYRLAIKEEAQKEWKKLNTNIQMQFKKKLVERLENPHVLASKLSNMPNCYKIKLRSAGYRLVYEVRDKDIVVIVIAVGK
RERNEVYKTAIKRL
VTYRLAIKEEAQKEWKKLNTNIQMQFKKKLVERLENPHVLASKLSNMPNCYKIKLRSAGYRLVYEVRDKDIVVIVIAVGK
RERNEVYKTAIKRL
Download Length: 285 bp
>T230904 NZ_CP125655:c3765070-3764648 [Cellulomonas sp. ES6]
GTGATCGTCCTCGACACGAACGTGCTGTCCGAGCCGCTGCGCGCGGAGCCCGACCCTGGTGTGCTCGGGTGGCTCGACGA
CGTGGACGGGTCCGCCGCGGTGACCGCGGTCAGCGTCGCCGAGCTCCTCACCGGGGCTCAGCACCTGCCCGCCGGGCGAC
GGCGCGACGGCCTCGTCCGGGCGATCGAGGCCATGGCGGAGTCGTTCCGGGACTCCGTGCTGCCGTTCGACGTCGACGCC
GCCCGCCGGTACGCCGGCTTCCAGGCGGCCAGGCGCGCCGCCGGCCGCCCCCTGAGCGTCGAGGACGGCATGATCGCCGC
CATCTGCGCGAGCCGGGGCGCGACGCTCGCGACGCGGAACACCCGTGACTTCGCCGGGCTCGGCCTCCCGCTGGTGGACC
CGTGGGAGGCTGGCCGCCCCTGA
GTGATCGTCCTCGACACGAACGTGCTGTCCGAGCCGCTGCGCGCGGAGCCCGACCCTGGTGTGCTCGGGTGGCTCGACGA
CGTGGACGGGTCCGCCGCGGTGACCGCGGTCAGCGTCGCCGAGCTCCTCACCGGGGCTCAGCACCTGCCCGCCGGGCGAC
GGCGCGACGGCCTCGTCCGGGCGATCGAGGCCATGGCGGAGTCGTTCCGGGACTCCGTGCTGCCGTTCGACGTCGACGCC
GCCCGCCGGTACGCCGGCTTCCAGGCGGCCAGGCGCGCCGCCGGCCGCCCCCTGAGCGTCGAGGACGGCATGATCGCCGC
CATCTGCGCGAGCCGGGGCGCGACGCTCGCGACGCGGAACACCCGTGACTTCGCCGGGCTCGGCCTCCCGCTGGTGGACC
CGTGGGAGGCTGGCCGCCCCTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 9157.40 Da Isoelectric Point: 4.3046
>AT230904 WP_197673587.1 NZ_CP090495:c1755554-1755309 [Photobacterium damselae subsp. damselae]
IHQVLADNTISISELKKNPMSVVNDADGFPVAVLNHNQPAFYCIPADAYEMLLDKLEDVELADLVRKRRNSKEFEIDISD
L
IHQVLADNTISISELKKNPMSVVNDADGFPVAVLNHNQPAFYCIPADAYEMLLDKLEDVELADLVRKRRNSKEFEIDISD
L
Download Length: 246 bp
>AT230904 NZ_CP125655:c3765294-3765067 [Cellulomonas sp. ES6]
GTGGCGACCGTGACCGTGCGGAACCTGGACGACGAGGTGCAGCGACGCCTCAAGGAGCGCGCAGCGCACCACCACCGGTC
CATGGAGGCCGAGGCGCGCGCGATCCTCAGCGCGGCGGTCCTCGACACCGGCCTGACCCGGTCCTGGCTCGACGCCGCGC
GCGACCTGCGCGGCGACGACCTGACGCTCCCGACGCGGTCGGCCCCGCGCGAGGTCGATCTCGGGTGA
GTGGCGACCGTGACCGTGCGGAACCTGGACGACGAGGTGCAGCGACGCCTCAAGGAGCGCGCAGCGCACCACCACCGGTC
CATGGAGGCCGAGGCGCGCGCGATCCTCAGCGCGGCGGTCCTCGACACCGGCCTGACCCGGTCCTGGCTCGACGCCGCGC
GCGACCTGCGCGGCGACGACCTGACGCTCCCGACGCGGTCGGCCCCGCGCGAGGTCGATCTCGGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|