Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1816223..1816742 | Replicon | chromosome |
| Accession | NZ_CP090485 | ||
| Organism | Photobacterium damselae subsp. damselae strain AS-16-0963-1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A7Y7QCC3 |
| Locus tag | IHC93_RS08585 | Protein ID | WP_068946750.1 |
| Coordinates | 1816223..1816507 (-) | Length | 95 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | IHC93_RS08590 | Protein ID | WP_197673587.1 |
| Coordinates | 1816497..1816742 (-) | Length | 82 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC93_RS08550 (IHC93_08550) | 1811724..1812512 | + | 789 | WP_237030931.1 | RecX family transcriptional regulator | - |
| IHC93_RS08555 (IHC93_08555) | 1812548..1813000 | - | 453 | WP_237030932.1 | N-acetyltransferase | - |
| IHC93_RS08560 (IHC93_08560) | 1813063..1813395 | - | 333 | WP_069531582.1 | DUF4377 domain-containing protein | - |
| IHC93_RS08565 (IHC93_08565) | 1813558..1813842 | + | 285 | WP_106261788.1 | damage-inducible protein J | - |
| IHC93_RS08570 (IHC93_08570) | 1813961..1814308 | - | 348 | WP_036763975.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| IHC93_RS08575 (IHC93_08575) | 1814323..1815060 | - | 738 | WP_005299667.1 | hydrogenase nickel incorporation protein HypB | - |
| IHC93_RS08580 (IHC93_08580) | 1815391..1815960 | + | 570 | WP_086366827.1 | hypothetical protein | - |
| IHC93_RS08585 (IHC93_08585) | 1816223..1816507 | - | 285 | WP_068946750.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| IHC93_RS08590 (IHC93_08590) | 1816497..1816742 | - | 246 | WP_197673587.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| IHC93_RS08595 (IHC93_08595) | 1817099..1817494 | - | 396 | WP_036763978.1 | membrane protein | - |
| IHC93_RS08600 (IHC93_08600) | 1817736..1818293 | - | 558 | WP_005299673.1 | heme utilization protein HutZ | - |
| IHC93_RS08605 (IHC93_08605) | 1818293..1818817 | - | 525 | WP_044175768.1 | heme utilization cystosolic carrier protein HutX | - |
| IHC93_RS08610 (IHC93_08610) | 1818871..1820262 | - | 1392 | WP_237040933.1 | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW | - |
| IHC93_RS08615 (IHC93_08615) | 1820659..1821417 | + | 759 | WP_237040934.1 | energy transducer TonB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | hcp1 / clpB/vasG / vasE / vasA / vipB/mglB / vipA/mglA | 1428034..1845708 | 417674 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 11147.24 Da Isoelectric Point: 10.6691
>T230899 WP_068946750.1 NZ_CP090485:c1816507-1816223 [Photobacterium damselae subsp. damselae]
VTYRLAIKEEAQKEWKKLNTNIQMQFKKKLVERLENPHVLASKLSNMPNCYKIKLRSAGYRLVYEVRDKDIVVIVIAVGK
RERNEVYKTAIKRL
VTYRLAIKEEAQKEWKKLNTNIQMQFKKKLVERLENPHVLASKLSNMPNCYKIKLRSAGYRLVYEVRDKDIVVIVIAVGK
RERNEVYKTAIKRL
Download Length: 285 bp
>T230899 NZ_CP125652:2890306-2890722 [Rhizobium sp. BT04]
ATGATCCATCTTGATACCAATGTCGCAGTCGCGCTCTTGAACGGACGGCCACGTCAAGTTCGCGAGCGCTTCGATGAGGC
GCGAAATGCAGGAACCCCGCTCGGCCTGTCAATCATCGTCTATCATGAACTGATGTATGGTGCCGCAGCCAGCGAGCGCC
GACACGCGAACGAGGAGAAGATCGCCCTGTTCATCGCTTCGGGCGGGATTTCTCTGATCGATTTCAACGAGGGCGACGCA
CAAGAAGCAGCGGATATTCGTGCCCATCTCCGGAGACAGGGCACTCCGATCGGGCCGTATGATGTGCTGATCGCCGCCCA
CGCGCGCCGAGCCGGCACCGTGCTGGTGACAGCCAATACAGGCGAGTTTGCCCGTGTGCCTGGCCTGCAAGTGCTGGACT
GGGCAGCAGCCTCGTAG
ATGATCCATCTTGATACCAATGTCGCAGTCGCGCTCTTGAACGGACGGCCACGTCAAGTTCGCGAGCGCTTCGATGAGGC
GCGAAATGCAGGAACCCCGCTCGGCCTGTCAATCATCGTCTATCATGAACTGATGTATGGTGCCGCAGCCAGCGAGCGCC
GACACGCGAACGAGGAGAAGATCGCCCTGTTCATCGCTTCGGGCGGGATTTCTCTGATCGATTTCAACGAGGGCGACGCA
CAAGAAGCAGCGGATATTCGTGCCCATCTCCGGAGACAGGGCACTCCGATCGGGCCGTATGATGTGCTGATCGCCGCCCA
CGCGCGCCGAGCCGGCACCGTGCTGGTGACAGCCAATACAGGCGAGTTTGCCCGTGTGCCTGGCCTGCAAGTGCTGGACT
GGGCAGCAGCCTCGTAG
Antitoxin
Download Length: 82 a.a. Molecular weight: 9157.40 Da Isoelectric Point: 4.3046
>AT230899 WP_197673587.1 NZ_CP090485:c1816742-1816497 [Photobacterium damselae subsp. damselae]
IHQVLADNTISISELKKNPMSVVNDADGFPVAVLNHNQPAFYCIPADAYEMLLDKLEDVELADLVRKRRNSKEFEIDISD
L
IHQVLADNTISISELKKNPMSVVNDADGFPVAVLNHNQPAFYCIPADAYEMLLDKLEDVELADLVRKRRNSKEFEIDISD
L
Download Length: 246 bp
>AT230899 NZ_CP125652:2890064-2890306 [Rhizobium sp. BT04]
ATGAGCGCGACCGCCAAGCTATTCACGCATGGGCGCAGCCAGGCCGTGCGCCTGCCAAAAGAGTTCCGCTTCGAAGGCAA
GGAGGTTCGGGTCAGCCGGGTCGGCAATCGAGTCATCCTCGAACCGCTCGACGCTGACAATGCCATGCCTTGGGCAGCAA
TCGACAAGCTGGGCGACACGCCTTTCATGCCCGAAGGTCGTGAGCAACCATCGATGCCAGCCGACCGCGCCGTGTTCGAC
TGA
ATGAGCGCGACCGCCAAGCTATTCACGCATGGGCGCAGCCAGGCCGTGCGCCTGCCAAAAGAGTTCCGCTTCGAAGGCAA
GGAGGTTCGGGTCAGCCGGGTCGGCAATCGAGTCATCCTCGAACCGCTCGACGCTGACAATGCCATGCCTTGGGCAGCAA
TCGACAAGCTGGGCGACACGCCTTTCATGCCCGAAGGTCGTGAGCAACCATCGATGCCAGCCGACCGCGCCGTGTTCGAC
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|