Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2107207..2107478 | Replicon | chromosome |
| Accession | NZ_CP090456 | ||
| Organism | Escherichia coli strain B379 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2107337..2107440 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2107207..2107478 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ684_RS10025 | 2103762..2104424 | - | 663 | WP_234679345.1 | exodeoxyribonuclease X | - |
| LZ684_RS10030 | 2104448..2105104 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LZ684_RS10035 | 2105206..2105436 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LZ684_RS10040 | 2105575..2105949 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LZ684_RS10045 | 2105953..2106825 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| LZ684_RS10050 | 2106838..2107179 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2107207..2107478 | - | 272 | - | - | Antitoxin |
| - | 2107337..2107440 | + | 104 | - | - | Toxin |
| LZ684_RS10055 | 2107575..2108231 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| LZ684_RS10060 | 2108232..2108423 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LZ684_RS10065 | 2108528..2108764 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LZ684_RS10070 | 2108882..2110321 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T230807 NZ_CP090456:2107337-2107440 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT230807 NZ_CP090456:c2107478-2107207 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
