Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1906985..1907130 | Replicon | chromosome |
| Accession | NZ_CP090429 | ||
| Organism | Klebsiella pneumoniae strain DY1928 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907021..1907123 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1906985..1907130 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LYZ32_RS09285 | 1902115..1904175 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LYZ32_RS09290 | 1904179..1904838 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LYZ32_RS09295 | 1904917..1905147 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LYZ32_RS09300 | 1905260..1905634 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LYZ32_RS09305 | 1905638..1906507 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LYZ32_RS09310 | 1906524..1906862 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1906985..1907130 | - | 146 | - | - | Antitoxin |
| - | 1907021..1907123 | + | 103 | - | - | Toxin |
| LYZ32_RS09315 | 1907499..1907642 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LYZ32_RS09320 | 1907747..1908715 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| LYZ32_RS09325 | 1908872..1909525 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| LYZ32_RS09330 | 1909522..1909713 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LYZ32_RS09335 | 1909811..1910050 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LYZ32_RS09340 | 1910166..1911599 | - | 1434 | WP_032447684.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230711 NZ_CP090429:1907021-1907123 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230711 NZ_CP090429:c1907130-1906985 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
