Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2041799..2042067 | Replicon | chromosome |
| Accession | NZ_CP090402 | ||
| Organism | Shigella sp. PIB | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2041926..2042029 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2041799..2042067 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH19_RS09735 | 2038352..2039014 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LXH19_RS09740 | 2039038..2039694 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LXH19_RS09745 | 2039796..2040026 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LXH19_RS09750 | 2040165..2040539 | + | 375 | WP_001578488.1 | CopC domain-containing protein YobA | - |
| LXH19_RS09755 | 2040543..2041415 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| LXH19_RS09760 | 2041428..2041769 | + | 342 | WP_000976485.1 | YebY family protein | - |
| - | 2041799..2042067 | - | 269 | - | - | Antitoxin |
| - | 2041926..2042029 | + | 104 | - | - | Toxin |
| LXH19_RS09765 | 2042164..2042820 | + | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| LXH19_RS09770 | 2042821..2043012 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LXH19_RS09775 | 2043117..2043353 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LXH19_RS09780 | 2043471..2044910 | - | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2034487..2057907 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T230658 NZ_CP090402:2041926-2042029 [Shigella sp. PIB]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT230658 NZ_CP090402:c2042067-2041799 [Shigella sp. PIB]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
