Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040693..2040838 | Replicon | chromosome |
| Accession | NZ_CP090398 | ||
| Organism | Klebsiella pneumoniae strain F94 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040729..2040831 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040693..2040838 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZG48_RS09995 (LZG48_09995) | 2035823..2037883 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LZG48_RS10000 (LZG48_10000) | 2037887..2038546 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LZG48_RS10005 (LZG48_10005) | 2038625..2038855 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LZG48_RS10010 (LZG48_10010) | 2038968..2039342 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LZG48_RS10015 (LZG48_10015) | 2039346..2040215 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LZG48_RS10020 (LZG48_10020) | 2040232..2040570 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2040693..2040838 | - | 146 | - | - | Antitoxin |
| - | 2040729..2040831 | + | 103 | - | - | Toxin |
| LZG48_RS10025 (LZG48_10025) | 2041206..2041349 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LZG48_RS10030 (LZG48_10030) | 2041454..2042422 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LZG48_RS10035 (LZG48_10035) | 2042579..2043232 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LZG48_RS10040 (LZG48_10040) | 2043229..2043420 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LZG48_RS10045 (LZG48_10045) | 2043518..2043757 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LZG48_RS10050 (LZG48_10050) | 2043873..2045306 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230619 NZ_CP090398:2040729-2040831 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230619 NZ_CP090398:c2040838-2040693 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
