Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1866923..1867068 | Replicon | chromosome |
| Accession | NZ_CP090393 | ||
| Organism | Klebsiella pneumoniae strain YZH2429 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1866959..1867061 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1866923..1867068 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LY283_RS09060 | 1862053..1864113 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LY283_RS09065 | 1864117..1864776 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LY283_RS09070 | 1864855..1865085 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LY283_RS09075 | 1865198..1865572 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LY283_RS09080 | 1865576..1866445 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LY283_RS09085 | 1866462..1866800 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1866923..1867068 | - | 146 | - | - | Antitoxin |
| - | 1866959..1867061 | + | 103 | - | - | Toxin |
| LY283_RS09090 | 1867436..1867579 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LY283_RS09095 | 1867684..1868652 | - | 969 | WP_181834034.1 | VirK/YbjX family protein | - |
| LY283_RS09100 | 1868809..1869462 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LY283_RS09105 | 1869459..1869650 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LY283_RS09110 | 1869748..1869987 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LY283_RS09115 | 1870103..1871536 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230578 NZ_CP090393:1866959-1867061 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230578 NZ_CP090393:c1867068-1866923 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
