Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1351173..1351318 Replicon chromosome
Accession NC_011205
Organism Salmonella enterica subsp. enterica serovar Dublin str. CT 02021853

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1351213..1351316 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1351173..1351318 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1351173..1351318 - 146 - - Antitoxin
- 1351213..1351316 + 104 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sodCI / sopE2 / sopE2 1345511..1432156 86645


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T23056 NC_011205:1351213-1351316 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT23056 NC_011205:c1351318-1351173 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References