230486

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3834911..3835008 Replicon chromosome
Accession NZ_CP090356
Organism Pantoea ananatis strain JBR-LB3-16

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3834911..3835008 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3834911..3835008 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LVR30_RS17960 (LVR30_17965) 3830130..3831752 - 1623 WP_210450733.1 alpha-glucoside-specific PTS transporter subunit IIBC -
LVR30_RS17965 (LVR30_17970) 3832032..3832736 + 705 WP_210450732.1 GntR family transcriptional regulator -
LVR30_RS17970 (LVR30_17975) 3833226..3834770 + 1545 WP_014593871.1 methyl-accepting chemotaxis protein -
- 3834911..3835008 - 98 - - Toxin
LVR30_RS17975 (LVR30_17980) 3835123..3835470 - 348 WP_014593872.1 YebY family protein -
LVR30_RS17980 (LVR30_17985) 3835498..3836373 - 876 WP_110286800.1 copper homeostasis membrane protein CopD -
LVR30_RS17985 (LVR30_17990) 3836378..3836752 - 375 WP_110286801.1 copper homeostasis periplasmic binding protein CopC -
LVR30_RS17990 (LVR30_17995) 3836903..3837133 + 231 WP_019105100.1 DNA polymerase III subunit theta -
LVR30_RS17995 (LVR30_18000) 3837133..3837804 + 672 WP_186306718.1 exodeoxyribonuclease X -
LVR30_RS18000 (LVR30_18005) 3837788..3839860 - 2073 WP_128392063.1 prolyl oligopeptidase family serine peptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 98 bp

>T230486 NZ_CP090356:c3835008-3834911 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 98 bp

>AT230486 NZ_CP090356:3834911-3835008 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References