Detailed information of TA system TA230483

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/-
• Location: 5431510..5431978
• Replicon: chromosome
• Accession: NZ_CP090355
• Organism: Pseudomonas kribbensis strain H38E-23

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: LXN51_RS24910
• Protein ID: WP_234206646.1
• Coordinates: 5431742..5431978 (+)
• Length: 79 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: LXN51_RS24905
• Protein ID: WP_085701856.1
• Coordinates: 5431510..5431704 (+)
• Length: 65 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LXN51_RS24885 (LXN51_24885)	5427141..5428109	-	969	WP_085701860.1	Gfo/Idh/MocA family oxidoreductase	-
LXN51_RS24890 (LXN51_24890)	5428119..5429006	-	888	WP_085701859.1	Dyp-type peroxidase	-
LXN51_RS24895 (LXN51_24895)	5429063..5430097	-	1035	WP_085701858.1	AraC family transcriptional regulator	-
LXN51_RS24900 (LXN51_24900)	5430309..5431256	+	948	WP_085701857.1	transporter	-
LXN51_RS24905 (LXN51_24905)	5431510..5431704	+	195	WP_085701856.1	stability determinant	Antitoxin
LXN51_RS24910 (LXN51_24910)	5431742..5431978	+	237	WP_234206646.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Small toxic protein BsrE-like (14-47)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 79 a.a.
• Molecular weight: 8865.05 Da
• Isoelectric Point: 10.5558

>T230483 WP_234206646.1 NZ_CP090355:5431742-5431978 [Pseudomonas kribbensis]
IDYVEQYNSNASTALQHKVGAATQRLSSIPYGYRSGRVPGTREMVVNPNYLLVYRVNGHIKILTLVHTRRQYPRTSST

Nucleotide

• Length: 237 bp

>T230483 NZ_CP124908:c2691583-2691440 [Enterococcus faecalis]
ATGAGCGTACTTCCAAAATTTACAGAAAGGAGAGGCCTGTTGTCAGCATATGAAACAATTCAGACGATCCTAGGGTTTGG
TATGTTTACCATTGCTTTGATTGCGCTGATTGTGAAATTGCTTAAAAATGACAATAAAAAATAA

Antitoxin

Protein

• Length: 65 a.a.
• Molecular weight: 7478.44 Da
• Isoelectric Point: 4.7815

>AT230483 WP_085701856.1 NZ_CP090355:5431510-5431704 [Pseudomonas kribbensis]
MSILLSPFYSDFESEEEAESYDRWFRAKVQAVLDDPRPGIPHKEAMVRLDQLLEEKRKNRPAAA

Nucleotide

• Length: 195 bp

>AT230483 NZ_CP124908:2691684-2691882 [Enterococcus faecalis]
TTTTTAGGGAAATGTGCTATAATGAAAACGAAAAGAGAGATATGCTTCAACATACCTCTCTGATGTAGAGCCGTTTAAGA
CGGTGACCGATTGTATTATTTAAAAATAACCGTACTGGTCAAAGTAGACGGTTATTTTTTATTGTCATTTTTAAGCAATT
TCACAATCAGTGCAATCAAAGCAATGGTAAACATACCAA