Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1236408..1236551 Replicon chromosome
Accession NC_011149
Organism Salmonella enterica subsp. enterica serovar Agona str. SL483

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1236446..1236549 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1236408..1236551 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1236408..1236551 - 144 - - Antitoxin
- 1236446..1236549 + 104 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 1239731..1240408 677


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T23045 NC_011149:1236446-1236549 [Salmonella enterica subsp. enterica serovar Agona str. SL483]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT23045 NC_011149:c1236551-1236408 [Salmonella enterica subsp. enterica serovar Agona str. SL483]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References