Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1-VagC |
| Location | 2528966..2529654 | Replicon | chromosome |
| Accession | NZ_CP090316 | ||
| Organism | Xylella fastidiosa subsp. morus strain Riv16 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | IUD23_RS11590 | Protein ID | WP_038230656.1 |
| Coordinates | 2529250..2529654 (+) | Length | 135 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | IUD23_RS11585 | Protein ID | WP_230577702.1 |
| Coordinates | 2528966..2529253 (+) | Length | 96 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD23_RS11545 (IUD23_11545) | 2525225..2525533 | - | 309 | WP_004089386.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IUD23_RS11550 (IUD23_11550) | 2525542..2525781 | - | 240 | WP_011097871.1 | antitoxin | - |
| IUD23_RS11555 (IUD23_11555) | 2525919..2526272 | - | 354 | WP_040123185.1 | hypothetical protein | - |
| IUD23_RS11560 (IUD23_11560) | 2526269..2526910 | - | 642 | WP_012382583.1 | Gp138 family membrane-puncturing spike protein | - |
| IUD23_RS11565 (IUD23_11565) | 2526907..2527737 | - | 831 | WP_038230303.1 | hypothetical protein | - |
| IUD23_RS11570 (IUD23_11570) | 2527734..2528051 | - | 318 | WP_012382585.1 | hypothetical protein | - |
| IUD23_RS11575 (IUD23_11575) | 2528051..2528500 | - | 450 | WP_234056344.1 | hypothetical protein | - |
| IUD23_RS11580 (IUD23_11580) | 2528516..2528821 | - | 306 | WP_230577600.1 | hypothetical protein | - |
| IUD23_RS11585 (IUD23_11585) | 2528966..2529253 | + | 288 | WP_230577702.1 | antitoxin | Antitoxin |
| IUD23_RS11590 (IUD23_11590) | 2529250..2529654 | + | 405 | WP_038230656.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| IUD23_RS11595 (IUD23_11595) | 2529673..2530392 | - | 720 | WP_230577703.1 | hypothetical protein | - |
| IUD23_RS11600 (IUD23_11600) | 2530389..2531375 | - | 987 | WP_234056345.1 | phage tail tape measure protein | - |
| IUD23_RS11605 (IUD23_11605) | 2531434..2531598 | - | 165 | WP_196242993.1 | hypothetical protein | - |
| IUD23_RS11610 (IUD23_11610) | 2531625..2532047 | - | 423 | WP_234056346.1 | putative phage tail assembly chaperone | - |
| IUD23_RS11615 (IUD23_11615) | 2532044..2532481 | - | 438 | WP_234056347.1 | DUF3277 family protein | - |
| IUD23_RS11620 (IUD23_11620) | 2532491..2532724 | - | 234 | WP_038230061.1 | DUF3383 family protein | - |
| IUD23_RS11625 (IUD23_11625) | 2532741..2532974 | - | 234 | WP_230577706.1 | transposase | - |
| IUD23_RS11630 (IUD23_11630) | 2532878..2533621 | - | 744 | WP_230577707.1 | transposase | - |
| IUD23_RS11635 (IUD23_11635) | 2533786..2533947 | - | 162 | WP_014607806.1 | helix-turn-helix domain-containing protein | - |
| IUD23_RS11640 (IUD23_11640) | 2533941..2534514 | - | 574 | Protein_2283 | IS607 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 2519463..2538665 | 19202 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 135 a.a. Molecular weight: 14667.97 Da Isoelectric Point: 5.6955
>T230435 WP_038230656.1 NZ_CP090316:2529250-2529654 [Xylella fastidiosa subsp. morus]
VSGYMLDTNIISDIIRNPFGAVACRIEHVGYPNICTSVIVAAELRYGCTKNGSVKLLSRVQDILKTLPLLPLEIPVDTTY
GSIRAELEAAGQLIGANDLLIAAHAYVLGLTLVTDNTREFSRIRGLDVQNWLER
VSGYMLDTNIISDIIRNPFGAVACRIEHVGYPNICTSVIVAAELRYGCTKNGSVKLLSRVQDILKTLPLLPLEIPVDTTY
GSIRAELEAAGQLIGANDLLIAAHAYVLGLTLVTDNTREFSRIRGLDVQNWLER
Download Length: 405 bp
>T230435 NZ_CP124898:c1237560-1237216 [Enterococcus faecalis]
ATGAAAAGTATCAAAGAGTTGGTGGAAGAATATGAAGTAGAGTTAGTTTTCGCTCCAATAAATAAGCGCGCATGTTACGA
GCCAGTCAAAAGAATAATTTTCGTAAATCAAAATTTATCTATCGAAGAACAAGAAGAGTCTATATTCCATGAGTTCAAAC
ATGTTGTCTCCCATTCGGATTATATTGAGTTATATAAAATTCCTTCTTTTAGAAATAAGATGGAAGCTGAGGCAGATTAT
CATATGTTTAAATGTCTTATTGAAAAACATGACGGGCAATTTAATTATTCTAATGTGATTACTCATTACAATTTAAAGAT
GGGACAGGAAACTTATTTAAATTAA
ATGAAAAGTATCAAAGAGTTGGTGGAAGAATATGAAGTAGAGTTAGTTTTCGCTCCAATAAATAAGCGCGCATGTTACGA
GCCAGTCAAAAGAATAATTTTCGTAAATCAAAATTTATCTATCGAAGAACAAGAAGAGTCTATATTCCATGAGTTCAAAC
ATGTTGTCTCCCATTCGGATTATATTGAGTTATATAAAATTCCTTCTTTTAGAAATAAGATGGAAGCTGAGGCAGATTAT
CATATGTTTAAATGTCTTATTGAAAAACATGACGGGCAATTTAATTATTCTAATGTGATTACTCATTACAATTTAAAGAT
GGGACAGGAAACTTATTTAAATTAA
Antitoxin
Download Length: 96 a.a. Molecular weight: 11006.61 Da Isoelectric Point: 4.5716
>AT230435 WP_230577702.1 NZ_CP090316:2528966-2529253 [Xylella fastidiosa subsp. morus]
MDAVPMPISSPLSRTKEAKLFRNNRSQAVRIPVEFELPGDRVLIHREGSKLIIEPITRPTNIVELLHEWRRETPLDPEDQ
FPDIDDMPVQPEDIL
MDAVPMPISSPLSRTKEAKLFRNNRSQAVRIPVEFELPGDRVLIHREGSKLIIEPITRPTNIVELLHEWRRETPLDPEDQ
FPDIDDMPVQPEDIL
Download Length: 288 bp
>AT230435 NZ_CP124898:c1237909-1237577 [Enterococcus faecalis]
ATGAACCTCTTGGAACGTATAAAAAAACTAGCAAAAGATAGAGATGTGTCTATTTATCAGCTTGAAGAAGAAATAAATAT
TGGACGAAATACTATTTATCAATGGAATAAGCGAACACCTTCTTCGGATAAACTTGAAGCTGTAGCCAATTATTTTAATG
TTTCTGTTGATTATTTATTAGGTCGTACTGAAAATCCAAACCAAGCTGGTGCTAAACCATCTGATGATTTAGATGAAGTA
TTAGACAATGTGATGAGTTTCGATGGTGAGCCTTTGGATGATCATGATCGGGAAGTTATTCGTGCTTATTTGAAAGGGAG
ATTCGGAAAATAA
ATGAACCTCTTGGAACGTATAAAAAAACTAGCAAAAGATAGAGATGTGTCTATTTATCAGCTTGAAGAAGAAATAAATAT
TGGACGAAATACTATTTATCAATGGAATAAGCGAACACCTTCTTCGGATAAACTTGAAGCTGTAGCCAATTATTTTAATG
TTTCTGTTGATTATTTATTAGGTCGTACTGAAAATCCAAACCAAGCTGGTGCTAAACCATCTGATGATTTAGATGAAGTA
TTAGACAATGTGATGAGTTTCGATGGTGAGCCTTTGGATGATCATGATCGGGAAGTTATTCGTGCTTATTTGAAAGGGAG
ATTCGGAAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|