Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | shpAB/BrnT-BrnA |
| Location | 2230525..2231107 | Replicon | chromosome |
| Accession | NZ_CP090316 | ||
| Organism | Xylella fastidiosa subsp. morus strain Riv16 | ||
Toxin (Protein)
| Gene name | shpA | Uniprot ID | A0A060HA48 |
| Locus tag | IUD23_RS10115 | Protein ID | WP_038229226.1 |
| Coordinates | 2230525..2230815 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | shpB | Uniprot ID | A0A060HE88 |
| Locus tag | IUD23_RS10120 | Protein ID | WP_004091409.1 |
| Coordinates | 2230802..2231107 (+) | Length | 102 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD23_RS10090 (IUD23_10090) | 2226218..2227375 | - | 1158 | WP_038229247.1 | RNA-guided endonuclease TnpB family protein | - |
| IUD23_RS10095 (IUD23_10095) | 2227398..2227814 | + | 417 | WP_038229223.1 | IS200/IS605 family transposase | - |
| IUD23_RS10100 (IUD23_10100) | 2228220..2229146 | + | 927 | WP_051606204.1 | hypothetical protein | - |
| IUD23_RS10105 (IUD23_10105) | 2229288..2229614 | - | 327 | WP_004091396.1 | DNA-binding protein | - |
| IUD23_RS10110 (IUD23_10110) | 2229744..2230064 | - | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IUD23_RS10115 (IUD23_10115) | 2230525..2230815 | + | 291 | WP_038229226.1 | BrnT family toxin | Toxin |
| IUD23_RS10120 (IUD23_10120) | 2230802..2231107 | + | 306 | WP_004091409.1 | BrnA antitoxin family protein | Antitoxin |
| IUD23_RS10125 (IUD23_10125) | 2231359..2231601 | + | 243 | WP_004085758.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| IUD23_RS10130 (IUD23_10130) | 2231594..2231881 | + | 288 | WP_038229230.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IUD23_RS10135 (IUD23_10135) | 2231969..2232535 | + | 567 | WP_038229232.1 | recombinase family protein | - |
| IUD23_RS10140 (IUD23_10140) | 2232620..2232877 | - | 258 | WP_038229233.1 | hypothetical protein | - |
| IUD23_RS10145 (IUD23_10145) | 2233145..2233570 | - | 426 | WP_038229235.1 | antirestriction protein | - |
| IUD23_RS10150 (IUD23_10150) | 2233694..2234888 | - | 1195 | Protein_1990 | DUF5710 domain-containing protein | - |
| IUD23_RS10155 (IUD23_10155) | 2234854..2235852 | - | 999 | WP_004085391.1 | MBL fold metallo-hydrolase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2211955..2234152 | 22197 | |
| - | inside | IScluster/Tn | - | - | 2226218..2232535 | 6317 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11304.62 Da Isoelectric Point: 6.0917
>T230433 WP_038229226.1 NZ_CP090316:2230525-2230815 [Xylella fastidiosa subsp. morus]
VERYFEWDDKKAESNFRKHGIRFDEAALAFDDPFAVSEQNRIENGEQRWQTIGMAGGCLLLLVAHTVHFEDDGIEVVRII
SARRVDRKERRRYEHG
VERYFEWDDKKAESNFRKHGIRFDEAALAFDDPFAVSEQNRIENGEQRWQTIGMAGGCLLLLVAHTVHFEDDGIEVVRII
SARRVDRKERRRYEHG
Download Length: 291 bp
>T230433 NZ_CP124898:261713-262054 [Enterococcus faecalis]
ATGAATGTTGAAAAGAAGTACATTCCCAAAAAAGGAGATATTGTATGGATTGATTTTGATCCTGCTGCAGGTAAAGAAAT
TCAGAAGAGACGCCCTGGTTTAGTCGTGTCAAGATATGAATTTAATCGGAAAACCATGTTTGCTGTGATTTGCCCGATTA
CTTCCACCATTAAAAATATTCCCACTCGATATACGTTGCCCGATGACATAGAAACCCAAGGACAAGTAGTGATCTCACAA
CTGAAATCTTTGGACTTCACTGAAAGAAAATTAAGTCAAATTGAGCATTTGCCATTAAAAGATATGGCGAAAATTGACCA
AATAATTGAATATATTTTCTAG
ATGAATGTTGAAAAGAAGTACATTCCCAAAAAAGGAGATATTGTATGGATTGATTTTGATCCTGCTGCAGGTAAAGAAAT
TCAGAAGAGACGCCCTGGTTTAGTCGTGTCAAGATATGAATTTAATCGGAAAACCATGTTTGCTGTGATTTGCCCGATTA
CTTCCACCATTAAAAATATTCCCACTCGATATACGTTGCCCGATGACATAGAAACCCAAGGACAAGTAGTGATCTCACAA
CTGAAATCTTTGGACTTCACTGAAAGAAAATTAAGTCAAATTGAGCATTTGCCATTAAAAGATATGGCGAAAATTGACCA
AATAATTGAATATATTTTCTAG
Antitoxin
Download Length: 102 a.a. Molecular weight: 11684.43 Da Isoelectric Point: 9.4870
>AT230433 WP_004091409.1 NZ_CP090316:2230802-2231107 [Xylella fastidiosa subsp. morus]
MNMVRYKQSELPPLTEERKAELKALAKKPDSEIDYSDIPPLDESFWARAVPNPFFKPVKTHASVRIDSDVLAWLKSQGKG
YQTRMNAILREAMLRSLHQQE
MNMVRYKQSELPPLTEERKAELKALAKKPDSEIDYSDIPPLDESFWARAVPNPFFKPVKTHASVRIDSDVLAWLKSQGKG
YQTRMNAILREAMLRSLHQQE
Download Length: 306 bp
>AT230433 NZ_CP124898:261483-261713 [Enterococcus faecalis]
ATGCTAACAACTAAATCAAGAAGACAAGGAAGCTCGGTCGTTTTAACTTTACCCACTGATAATGGTAAAAAACCAAAAGT
CGACCAAGAATATATTGTGATGTATTCTGACGACGGTACAATTACATTAGTCCCTAAAATTCAGGATCCATTTAGTGAAG
GTCCAGAAGGTGAGTATTATGAAAAAGATGAGTGGCATGATCTTGCACCTGAGGGGAGAGAACTTTTTTAA
ATGCTAACAACTAAATCAAGAAGACAAGGAAGCTCGGTCGTTTTAACTTTACCCACTGATAATGGTAAAAAACCAAAAGT
CGACCAAGAATATATTGTGATGTATTCTGACGACGGTACAATTACATTAGTCCCTAAAATTCAGGATCCATTTAGTGAAG
GTCCAGAAGGTGAGTATTATGAAAAAGATGAGTGGCATGATCTTGCACCTGAGGGGAGAGAACTTTTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A060HA48 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A060HE88 |