Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1062923..1063066 Replicon chromosome
Accession NC_011147
Organism Salmonella enterica subsp. enterica serovar Paratyphi A str.

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1062962..1063064 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1062923..1063066 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1062923..1063066 - 144 - - Antitoxin
- 1062962..1063064 + 103 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sopE2 1057259..1100602 43343


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T23037 NC_011147:1062962-1063064 [Salmonella enterica subsp. enterica serovar Paratyphi A str.]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT23037 NC_011147:c1063066-1062923 [Salmonella enterica subsp. enterica serovar Paratyphi A str.]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCTAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References