Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 2228334..2228836 | Replicon | chromosome |
Accession | NC_011146 | ||
Organism | Geobacter bemidjiensis Bem |
Toxin (Protein)
Gene name | relE | Uniprot ID | B5EBR6 |
Locus tag | GBEM_RS09650 | Protein ID | WP_012530359.1 |
Coordinates | 2228334..2228588 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | relE | Uniprot ID | B5EBR7 |
Locus tag | GBEM_RS09655 | Protein ID | WP_012530360.1 |
Coordinates | 2228585..2228836 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GBEM_RS09635 | 2224541..2226697 | + | 2157 | WP_083770245.1 | hypothetical protein | - |
GBEM_RS09640 | 2226900..2227304 | + | 405 | WP_012530357.1 | GNAT family N-acetyltransferase | - |
GBEM_RS21045 | 2227471..2227626 | - | 156 | Protein_1916 | helix-turn-helix transcriptional regulator | - |
GBEM_RS09645 | 2227702..2228190 | + | 489 | WP_012530358.1 | VOC family protein | - |
GBEM_RS09650 | 2228334..2228588 | - | 255 | WP_012530359.1 | Txe/YoeB family addiction module toxin | Toxin |
GBEM_RS09655 | 2228585..2228836 | - | 252 | WP_012530360.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
GBEM_RS09660 | 2229204..2230262 | - | 1059 | WP_012530361.1 | low specificity L-threonine aldolase | - |
GBEM_RS09665 | 2230440..2231348 | - | 909 | WP_012530362.1 | DMT family transporter | - |
GBEM_RS09670 | 2231534..2232280 | + | 747 | WP_012530363.1 | basic amino acid ABC transporter substrate-binding protein | - |
GBEM_RS09675 | 2232438..2233223 | + | 786 | WP_041262721.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10188.67 Da Isoelectric Point: 9.7162
>T23035 WP_012530359.1 NC_011146:c2228588-2228334 [Geobacter bemidjiensis Bem]
MKLIFSESAWEDYLFWQSTDKKVAKRINTLIREIQRKPHEGIGKPEPLRHALSGYWSRRINDEHRIVYKVEDDSVMIAQL
RYHY
MKLIFSESAWEDYLFWQSTDKKVAKRINTLIREIQRKPHEGIGKPEPLRHALSGYWSRRINDEHRIVYKVEDDSVMIAQL
RYHY
Download Length: 255 bp
>T23035 NC_011146:c2228588-2228334 [Geobacter bemidjiensis Bem]
TTGAAGCTCATATTCTCGGAAAGCGCTTGGGAAGATTACCTGTTCTGGCAGAGCACAGACAAGAAGGTCGCCAAGCGCAT
CAACACCCTGATCAGGGAGATCCAGAGAAAGCCCCACGAAGGGATAGGGAAACCGGAACCACTGAGGCATGCTCTATCCG
GGTACTGGTCCCGCAGAATCAACGACGAGCATCGCATCGTGTACAAGGTCGAAGATGACTCAGTAATGATCGCGCAGCTT
CGTTACCACTACTAG
TTGAAGCTCATATTCTCGGAAAGCGCTTGGGAAGATTACCTGTTCTGGCAGAGCACAGACAAGAAGGTCGCCAAGCGCAT
CAACACCCTGATCAGGGAGATCCAGAGAAAGCCCCACGAAGGGATAGGGAAACCGGAACCACTGAGGCATGCTCTATCCG
GGTACTGGTCCCGCAGAATCAACGACGAGCATCGCATCGTGTACAAGGTCGAAGATGACTCAGTAATGATCGCGCAGCTT
CGTTACCACTACTAG
Antitoxin
Download Length: 84 a.a. Molecular weight: 9371.78 Da Isoelectric Point: 4.8604
>AT23035 WP_012530360.1 NC_011146:c2228836-2228585 [Geobacter bemidjiensis Bem]
MNSITYSSVRSKLAETMEKVCDDHAPVIITRKAAKPVVMMSLDDYEALEETAYLLRSPKNVRRLVESIAELETGKATERE
LID
MNSITYSSVRSKLAETMEKVCDDHAPVIITRKAAKPVVMMSLDDYEALEETAYLLRSPKNVRRLVESIAELETGKATERE
LID
Download Length: 252 bp
>AT23035 NC_011146:c2228836-2228585 [Geobacter bemidjiensis Bem]
ATGAATTCGATAACCTACAGTTCCGTGCGCAGCAAACTGGCAGAAACGATGGAGAAGGTATGTGACGACCATGCCCCCGT
CATCATCACCCGCAAAGCGGCAAAGCCGGTGGTCATGATGTCACTTGACGACTACGAAGCGCTGGAGGAAACGGCGTACC
TGCTGCGAAGCCCTAAAAACGTGCGGCGGCTGGTTGAATCTATAGCCGAGCTAGAGACCGGAAAGGCAACCGAACGGGAG
CTGATCGATTGA
ATGAATTCGATAACCTACAGTTCCGTGCGCAGCAAACTGGCAGAAACGATGGAGAAGGTATGTGACGACCATGCCCCCGT
CATCATCACCCGCAAAGCGGCAAAGCCGGTGGTCATGATGTCACTTGACGACTACGAAGCGCTGGAGGAAACGGCGTACC
TGCTGCGAAGCCCTAAAAACGTGCGGCGGCTGGTTGAATCTATAGCCGAGCTAGAGACCGGAAAGGCAACCGAACGGGAG
CTGATCGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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