Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2001979..2002119 | Replicon | chromosome |
| Accession | NZ_CP090244 | ||
| Organism | Serratia marcescens strain SMNSF-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002023..2002119 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2001979..2002119 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH15_RS09565 (LXH15_09565) | 1997248..1997643 | + | 396 | WP_097102344.1 | RidA family protein | - |
| LXH15_RS09570 (LXH15_09570) | 1997800..1998753 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| LXH15_RS09575 (LXH15_09575) | 1998785..1999015 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| LXH15_RS09580 (LXH15_09580) | 1999360..1999878 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| LXH15_RS09585 (LXH15_09585) | 2000170..2000586 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| LXH15_RS09590 (LXH15_09590) | 2000589..2001470 | + | 882 | WP_234214150.1 | copper homeostasis membrane protein CopD | - |
| LXH15_RS09595 (LXH15_09595) | 2001540..2001881 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 2001979..2002119 | - | 141 | - | - | Antitoxin |
| - | 2002023..2002119 | + | 97 | - | - | Toxin |
| LXH15_RS09600 (LXH15_09600) | 2002198..2003280 | - | 1083 | WP_103101180.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LXH15_RS09605 (LXH15_09605) | 2003255..2003530 | - | 276 | WP_015377485.1 | excisionase | - |
| LXH15_RS09610 (LXH15_09610) | 2003606..2004673 | - | 1068 | WP_234214151.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1995471..2045842 | 50371 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T230345 NZ_CP090244:2002023-2002119 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT230345 NZ_CP090244:c2002119-2001979 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
