Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 1474700..1475267 | Replicon | chromosome |
| Accession | NZ_CP090244 | ||
| Organism | Serratia marcescens strain SMNSF-1 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | LXH15_RS07035 | Protein ID | WP_234213958.1 |
| Coordinates | 1474700..1475005 (-) | Length | 102 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A8B4G8D1 |
| Locus tag | LXH15_RS07040 | Protein ID | WP_016928576.1 |
| Coordinates | 1475007..1475267 (-) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH15_RS07000 (LXH15_07000) | 1470348..1471424 | + | 1077 | WP_016928582.1 | urea ABC transporter permease subunit UrtC | - |
| LXH15_RS07005 (LXH15_07005) | 1471421..1472227 | + | 807 | WP_015377102.1 | urea ABC transporter ATP-binding protein UrtD | - |
| LXH15_RS07010 (LXH15_07010) | 1472240..1472938 | + | 699 | WP_079449519.1 | urea ABC transporter ATP-binding subunit UrtE | - |
| LXH15_RS07015 (LXH15_07015) | 1472946..1473245 | - | 300 | WP_042783942.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LXH15_RS07020 (LXH15_07020) | 1473230..1473493 | - | 264 | WP_004939442.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LXH15_RS07025 (LXH15_07025) | 1473628..1474140 | + | 513 | WP_033640967.1 | DUF2165 family protein | - |
| LXH15_RS07030 (LXH15_07030) | 1474163..1474675 | - | 513 | WP_016928578.1 | GNAT family N-acetyltransferase | - |
| LXH15_RS07035 (LXH15_07035) | 1474700..1475005 | - | 306 | WP_234213958.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LXH15_RS07040 (LXH15_07040) | 1475007..1475267 | - | 261 | WP_016928576.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| LXH15_RS07045 (LXH15_07045) | 1475336..1476571 | - | 1236 | WP_234213960.1 | FAD-dependent oxidoreductase | - |
| LXH15_RS07050 (LXH15_07050) | 1476648..1477217 | - | 570 | WP_234213961.1 | DUF4865 family protein | - |
| LXH15_RS07055 (LXH15_07055) | 1477323..1478192 | + | 870 | WP_234213963.1 | LysR substrate-binding domain-containing protein | - |
| LXH15_RS07060 (LXH15_07060) | 1478189..1479034 | - | 846 | WP_033640962.1 | 3-mercaptopyruvate sulfurtransferase | - |
| LXH15_RS07065 (LXH15_07065) | 1479141..1479563 | + | 423 | WP_234214279.1 | NUDIX hydrolase | - |
| LXH15_RS07070 (LXH15_07070) | 1479574..1480239 | - | 666 | WP_049299499.1 | epimerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 11965.69 Da Isoelectric Point: 8.6471
>T230342 WP_234213958.1 NZ_CP090244:c1475005-1474700 [Serratia marcescens]
MPAFRLTPQAQQDLLAIRHFTIEHWGQAQSRRYLEQLREVMHHLADMPEAGKAHFHDLGEEIHSFPYASHRIYYRNRPAG
ITVLTILHQAMVPHRHLEQRL
MPAFRLTPQAQQDLLAIRHFTIEHWGQAQSRRYLEQLREVMHHLADMPEAGKAHFHDLGEEIHSFPYASHRIYYRNRPAG
ITVLTILHQAMVPHRHLEQRL
Download Length: 306 bp
>T230342 NZ_CP124873:c4527076-4526543 [Klebsiella pneumoniae]
ATGGAGCAGCAACTGACGATTGAGATGATTGCCGATGCGTTCAGCTACGATATCACTGGATTTGATTGCGGCGAGGAAGC
GCTGAATACGTTTTTAAAAGAGCACCTCAAGCGGCAGCACGATGGACAAATCTTAAGGGGTTATGCGCTGGTCTCCGGGG
ATACCGTTCCCAGGTTGCTGGGTTATTACACCTTATCGGGGAGTTGTTTCGAGCGAGGCATGTTGCCGTCTAAAACTCAG
CAAAAGAAAATCCCGTATCAAAATGCGCCAAGCGTAACCCTCGGGCGGCTGGCCATTGATAAATCTGTTCAGGGGCAGGG
CTGGGGAGAGATGTTGGTTGCCCATGCGATGCGAGTGGTGTGGGGAGCGTCTAAAGCCGTTGGCATCTACGGATTGTTTG
TTGAAGCCCTTAATGAGAAGGCTAAAGCATTCTATCTTCGTCTGGGGTTTATACAGCTCGTGGATGAAAATAGTAACTTA
CTGTTTTATCCGACCAAATCGATTGAACAGCTCTTTACTGACGATGAGTCATAA
ATGGAGCAGCAACTGACGATTGAGATGATTGCCGATGCGTTCAGCTACGATATCACTGGATTTGATTGCGGCGAGGAAGC
GCTGAATACGTTTTTAAAAGAGCACCTCAAGCGGCAGCACGATGGACAAATCTTAAGGGGTTATGCGCTGGTCTCCGGGG
ATACCGTTCCCAGGTTGCTGGGTTATTACACCTTATCGGGGAGTTGTTTCGAGCGAGGCATGTTGCCGTCTAAAACTCAG
CAAAAGAAAATCCCGTATCAAAATGCGCCAAGCGTAACCCTCGGGCGGCTGGCCATTGATAAATCTGTTCAGGGGCAGGG
CTGGGGAGAGATGTTGGTTGCCCATGCGATGCGAGTGGTGTGGGGAGCGTCTAAAGCCGTTGGCATCTACGGATTGTTTG
TTGAAGCCCTTAATGAGAAGGCTAAAGCATTCTATCTTCGTCTGGGGTTTATACAGCTCGTGGATGAAAATAGTAACTTA
CTGTTTTATCCGACCAAATCGATTGAACAGCTCTTTACTGACGATGAGTCATAA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9442.59 Da Isoelectric Point: 4.1964
>AT230342 WP_016928576.1 NZ_CP090244:c1475267-1475007 [Serratia marcescens]
MYALTANEAKTQFGDLLLKAQREPVQINRNGKPVAVVMSVEDYQALEDLKLSALQQKIAQATAEEDAGKAVDGDAFFNRL
LTDETD
MYALTANEAKTQFGDLLLKAQREPVQINRNGKPVAVVMSVEDYQALEDLKLSALQQKIAQATAEEDAGKAVDGDAFFNRL
LTDETD
Download Length: 261 bp
>AT230342 NZ_CP124873:c4527353-4527087 [Klebsiella pneumoniae]
ATGCCCGCACTTAAAAAGCAGCGTATAGATTTGAGATTAACCGATGATGATAAGAGCATCATCGAGGAAGCTGCGGCAAT
TTCGAATCAGACGATTACCCAGTTTGTGGTTGCCAGTGCCTCAGAACGTGCTGCGGAAGTGATTGAGCAGCACCGCAGAA
TGGTCCTCAATGAGCAATCATGGAGCCTGGTGATGGAGGCGATTACCCAACCGCCAGCCCCGAATGATCGACTGAAACGT
GCAGCGAAGCGTCTACAAACCAGGTAA
ATGCCCGCACTTAAAAAGCAGCGTATAGATTTGAGATTAACCGATGATGATAAGAGCATCATCGAGGAAGCTGCGGCAAT
TTCGAATCAGACGATTACCCAGTTTGTGGTTGCCAGTGCCTCAGAACGTGCTGCGGAAGTGATTGAGCAGCACCGCAGAA
TGGTCCTCAATGAGCAATCATGGAGCCTGGTGATGGAGGCGATTACCCAACCGCCAGCCCCGAATGATCGACTGAAACGT
GCAGCGAAGCGTCTACAAACCAGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|