Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 326127..326272 | Replicon | chromosome |
| Accession | NZ_CP090242 | ||
| Organism | Klebsiella pneumoniae strain KPNSF-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 326163..326265 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 326127..326272 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH14_RS01365 | 321257..323317 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LXH14_RS01370 | 323321..323980 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LXH14_RS01375 | 324059..324289 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LXH14_RS01380 | 324402..324776 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LXH14_RS01385 | 324780..325649 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| LXH14_RS01390 | 325666..326004 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 326127..326272 | - | 146 | - | - | Antitoxin |
| - | 326163..326265 | + | 103 | - | - | Toxin |
| LXH14_RS01395 | 326640..326783 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LXH14_RS01400 | 326888..327856 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LXH14_RS01405 | 328013..328666 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LXH14_RS01410 | 328663..328854 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LXH14_RS01415 | 328952..329191 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LXH14_RS01420 | 329307..330740 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230322 NZ_CP090242:326163-326265 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230322 NZ_CP090242:c326272-326127 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
