Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1920866..1921011 | Replicon | chromosome |
| Accession | NZ_CP090218 | ||
| Organism | Klebsiella pneumoniae strain BY221 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1920902..1921004 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1920866..1921011 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVJ43_RS09395 | 1915996..1918056 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVJ43_RS09400 | 1918060..1918719 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| LVJ43_RS09405 | 1918798..1919028 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVJ43_RS09410 | 1919141..1919515 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVJ43_RS09415 | 1919519..1920388 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LVJ43_RS09420 | 1920405..1920743 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1920866..1921011 | - | 146 | - | - | Antitoxin |
| - | 1920902..1921004 | + | 103 | - | - | Toxin |
| LVJ43_RS09425 | 1921380..1921523 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVJ43_RS09430 | 1921628..1922596 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVJ43_RS09435 | 1922753..1923406 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| LVJ43_RS09440 | 1923403..1923594 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVJ43_RS09445 | 1923692..1923931 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVJ43_RS09450 | 1924047..1925480 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230284 NZ_CP090218:1920902-1921004 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230284 NZ_CP090218:c1921011-1920866 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
