Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | cptAB/Cpta(toxin) |
Location | 3219647..3220304 | Replicon | chromosome |
Accession | NZ_CP090217 | ||
Organism | Providencia rettgeri strain YK205 |
Toxin (Protein)
Gene name | cptA | Uniprot ID | A0A1J0E9L4 |
Locus tag | LVJ10_RS14690 | Protein ID | WP_042845040.1 |
Coordinates | 3219647..3220057 (-) | Length | 137 a.a. |
Antitoxin (Protein)
Gene name | cptB | Uniprot ID | A0A1J0E9J6 |
Locus tag | LVJ10_RS14695 | Protein ID | WP_042845042.1 |
Coordinates | 3220038..3220304 (-) | Length | 89 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LVJ10_RS14670 (LVJ10_14660) | 3215586..3217319 | - | 1734 | WP_274999015.1 | single-stranded-DNA-specific exonuclease RecJ | - |
LVJ10_RS14675 (LVJ10_14665) | 3217329..3218033 | - | 705 | WP_042845413.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
LVJ10_RS14680 (LVJ10_14670) | 3218055..3218957 | - | 903 | WP_129466206.1 | site-specific tyrosine recombinase XerD | - |
LVJ10_RS14685 (LVJ10_14675) | 3219075..3219593 | + | 519 | WP_042845038.1 | flavodoxin FldB | - |
LVJ10_RS14690 (LVJ10_14680) | 3219647..3220057 | - | 411 | WP_042845040.1 | protein YgfX | Toxin |
LVJ10_RS14695 (LVJ10_14685) | 3220038..3220304 | - | 267 | WP_042845042.1 | FAD assembly factor SdhE | Antitoxin |
LVJ10_RS14700 (LVJ10_14690) | 3220554..3221543 | + | 990 | WP_181468667.1 | tRNA-modifying protein YgfZ | - |
LVJ10_RS14705 (LVJ10_14695) | 3221555..3222175 | + | 621 | WP_042845046.1 | HD domain-containing protein | - |
LVJ10_RS14710 (LVJ10_14700) | 3222336..3223226 | + | 891 | WP_225832977.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 137 a.a. Molecular weight: 15461.25 Da Isoelectric Point: 10.6538
>T230281 WP_042845040.1 NZ_CP090217:c3220057-3219647 [Providencia rettgeri]
VVLWKSNLSISWKTQFFSTCVHGAVGMFLLVAPWAPAHSMIWLPLLAVVVASWAKSQKNISKIKGVAVLVNGNKVQWKKN
EWNIVKAPWLSRYGILLSLEALQGKQQKIHLWVAKDSVSEESWRNLNQLLLQYPDI
VVLWKSNLSISWKTQFFSTCVHGAVGMFLLVAPWAPAHSMIWLPLLAVVVASWAKSQKNISKIKGVAVLVNGNKVQWKKN
EWNIVKAPWLSRYGILLSLEALQGKQQKIHLWVAKDSVSEESWRNLNQLLLQYPDI
Download Length: 411 bp
>T230281 NZ_CP124824:4001357-4001575 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACCTCTGTCTGGAAATTTATCCGCTAA
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACCTCTGTCTGGAAATTTATCCGCTAA
Antitoxin
Download Length: 89 a.a. Molecular weight: 10619.16 Da Isoelectric Point: 4.8780
>AT230281 WP_042845042.1 NZ_CP090217:c3220304-3220038 [Providencia rettgeri]
MDIENKARIHWACRRGMRELDISIMPFFEYEYDSLTTNDKQVFVRLLECADPDLFNWLMNHGRPDDDELFRMVKLIQEKN
KNRGPVEI
MDIENKARIHWACRRGMRELDISIMPFFEYEYDSLTTNDKQVFVRLLECADPDLFNWLMNHGRPDDDELFRMVKLIQEKN
KNRGPVEI
Download Length: 267 bp
>AT230281 NZ_CP124824:4000956-4001330 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1J0E9L4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1J0E9J6 |