Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 738081..738226 | Replicon | chromosome |
| Accession | NZ_CP090203 | ||
| Organism | Klebsiella pneumoniae strain JNKPN26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 738117..738219 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 738081..738226 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXM99_RS03385 (LXM99_03385) | 733211..735271 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LXM99_RS03390 (LXM99_03390) | 735275..735934 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LXM99_RS03395 (LXM99_03395) | 736013..736243 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LXM99_RS03400 (LXM99_03400) | 736356..736730 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LXM99_RS03405 (LXM99_03405) | 736734..737603 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LXM99_RS03410 (LXM99_03410) | 737620..737958 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 738081..738226 | - | 146 | - | - | Antitoxin |
| - | 738117..738219 | + | 103 | - | - | Toxin |
| LXM99_RS03415 (LXM99_03415) | 738594..738737 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LXM99_RS03420 (LXM99_03420) | 738842..739810 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LXM99_RS03425 (LXM99_03425) | 739967..740620 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LXM99_RS03430 (LXM99_03430) | 740617..740808 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LXM99_RS03435 (LXM99_03435) | 740906..741145 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LXM99_RS03440 (LXM99_03440) | 741261..742694 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230215 NZ_CP090203:738117-738219 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230215 NZ_CP090203:c738226-738081 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
