Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2722052..2722253 | Replicon | chromosome |
| Accession | NZ_CP090192 | ||
| Organism | Enterobacter hormaechei strain TUECL19003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2722057..2722160 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2722052..2722253 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZU72_RS13055 (LZU72_13055) | 2718320..2719762 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LZU72_RS13060 (LZU72_13060) | 2719867..2720106 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LZU72_RS13065 (LZU72_13065) | 2720141..2720785 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| LZU72_RS13070 (LZU72_13070) | 2720953..2721933 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| LZU72_RS13075 (LZU72_13075) | 2721979..2722176 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2722052..2722253 | + | 202 | - | - | Antitoxin |
| - | 2722057..2722160 | - | 104 | - | - | Toxin |
| LZU72_RS13080 (LZU72_13080) | 2722302..2722640 | - | 339 | WP_022648464.1 | YebY family protein | - |
| LZU72_RS13085 (LZU72_13085) | 2722657..2723526 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| LZU72_RS13090 (LZU72_13090) | 2723528..2723899 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| LZU72_RS13095 (LZU72_13095) | 2724037..2724267 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LZU72_RS13100 (LZU72_13100) | 2724379..2725017 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LZU72_RS13105 (LZU72_13105) | 2725042..2725704 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T230170 NZ_CP090192:c2722160-2722057 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT230170 NZ_CP090192:2722052-2722253 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
