Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2722099..2722300 | Replicon | chromosome |
| Accession | NZ_CP090146 | ||
| Organism | Enterobacter hormaechei strain TUECL19001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2722104..2722207 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2722099..2722300 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXD76_RS13060 (LXD76_13060) | 2718367..2719809 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LXD76_RS13065 (LXD76_13065) | 2719914..2720153 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LXD76_RS13070 (LXD76_13070) | 2720188..2720832 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| LXD76_RS13075 (LXD76_13075) | 2721000..2721980 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| LXD76_RS13080 (LXD76_13080) | 2722026..2722223 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2722099..2722300 | + | 202 | - | - | Antitoxin |
| - | 2722104..2722207 | - | 104 | - | - | Toxin |
| LXD76_RS13085 (LXD76_13085) | 2722349..2722687 | - | 339 | WP_022648464.1 | YebY family protein | - |
| LXD76_RS13090 (LXD76_13090) | 2722704..2723573 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| LXD76_RS13095 (LXD76_13095) | 2723575..2723946 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| LXD76_RS13100 (LXD76_13100) | 2724084..2724314 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LXD76_RS13105 (LXD76_13105) | 2724426..2725064 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LXD76_RS13110 (LXD76_13110) | 2725089..2725751 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T230141 NZ_CP090146:c2722207-2722104 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT230141 NZ_CP090146:2722099-2722300 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
