Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1946611..1946754 Replicon chromosome
Accession NC_011094
Organism Salmonella enterica subsp. enterica serovar Schwarzengrund str.

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1946613..1946716 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1946611..1946754 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1946611..1946754 + 144 - - Antitoxin
- 1946613..1946716 - 104 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1931430..1968627 37197


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T23013 NC_011094:c1946716-1946613 [Salmonella enterica subsp. enterica serovar Schwarzengrund str.]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT23013 NC_011094:1946611-1946754 [Salmonella enterica subsp. enterica serovar Schwarzengrund str.]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References