Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003995..2004140 | Replicon | chromosome |
| Accession | NZ_CP090126 | ||
| Organism | Klebsiella pneumoniae strain KP46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2004031..2004133 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003995..2004140 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LWR79_RS09675 | 1999125..2001185 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LWR79_RS09680 | 2001189..2001848 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| LWR79_RS09685 | 2001927..2002157 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LWR79_RS09690 | 2002270..2002644 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LWR79_RS09695 | 2002648..2003517 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| LWR79_RS09700 | 2003534..2003872 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2003995..2004140 | - | 146 | - | - | Antitoxin |
| - | 2004031..2004133 | + | 103 | - | - | Toxin |
| LWR79_RS09705 | 2004509..2004652 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LWR79_RS09710 | 2004757..2005725 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LWR79_RS09715 | 2005882..2006535 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LWR79_RS09720 | 2006532..2006723 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LWR79_RS09725 | 2006821..2007060 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LWR79_RS09730 | 2007176..2008609 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T230058 NZ_CP090126:2004031-2004133 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT230058 NZ_CP090126:c2004140-2003995 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
