Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC(toxin) |
| Location | 329773..330404 | Replicon | plasmid pRLTp73_3 |
| Accession | NZ_CP090101 | ||
| Organism | Rhizobium leguminosarum strain Tp73_4 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | LZK79_RS29160 | Protein ID | WP_003555238.1 |
| Coordinates | 329773..330159 (-) | Length | 129 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | Q1M8C0 |
| Locus tag | LZK79_RS29165 | Protein ID | WP_003555240.1 |
| Coordinates | 330156..330404 (-) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZK79_RS29135 (LZK79_29145) | 324961..325137 | + | 177 | WP_183638790.1 | hypothetical protein | - |
| LZK79_RS29140 (LZK79_29150) | 325393..326610 | + | 1218 | WP_233938823.1 | plasmid partitioning protein RepA | - |
| LZK79_RS29145 (LZK79_29155) | 326607..327596 | + | 990 | WP_233938824.1 | plasmid partitioning protein RepB | - |
| LZK79_RS29150 (LZK79_29160) | 327796..329103 | + | 1308 | WP_130785360.1 | plasmid replication protein RepC | - |
| LZK79_RS29155 (LZK79_29165) | 329177..329584 | - | 408 | Protein_299 | transposase | - |
| LZK79_RS29160 (LZK79_29170) | 329773..330159 | - | 387 | WP_003555238.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| LZK79_RS29165 (LZK79_29175) | 330156..330404 | - | 249 | WP_003555240.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
| LZK79_RS29170 (LZK79_29180) | 330523..331664 | - | 1142 | Protein_302 | site-specific integrase | - |
| LZK79_RS29175 (LZK79_29185) | 331977..332354 | - | 378 | WP_233938825.1 | type II toxin-antitoxin system VapC family toxin | - |
| LZK79_RS29180 (LZK79_29190) | 332351..332641 | - | 291 | WP_233938826.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| LZK79_RS29185 (LZK79_29195) | 333112..333462 | + | 351 | WP_233938827.1 | hypothetical protein | - |
| LZK79_RS29190 (LZK79_29200) | 333594..334424 | - | 831 | WP_233938828.1 | helix-turn-helix transcriptional regulator | - |
| LZK79_RS29195 (LZK79_29205) | 334519..334920 | - | 402 | WP_233938936.1 | RidA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..371703 | 371703 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 129 a.a. Molecular weight: 13958.01 Da Isoelectric Point: 5.1800
>T230044 WP_003555238.1 NZ_CP090101:c330159-329773 [Rhizobium leguminosarum]
MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAFFRRAGIIIEPVTLEHGELAR
QAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDFAQTDVRAA
MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAFFRRAGIIIEPVTLEHGELAR
QAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDFAQTDVRAA
Download Length: 387 bp
>T230044 NZ_CP124665:c4544545-4543790 [Pseudomonas aeruginosa]
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9226.51 Da Isoelectric Point: 8.6265
>AT230044 WP_003555240.1 NZ_CP090101:c330404-330156 [Rhizobium leguminosarum]
MSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKIERRKGRASVEELLAIADRAAAHVKRPYVDHAEFLYDENGL
PK
MSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKIERRKGRASVEELLAIADRAAAHVKRPYVDHAEFLYDENGL
PK
Download Length: 249 bp
>AT230044 NZ_CP124665:c4545048-4544680 [Pseudomonas aeruginosa]
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTGGATGCGATCCGCGGCAAGGTCTGA
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTGGATGCGATCCGCGGCAAGGTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|