Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2017072..2017215 Replicon
Accession NC_011083
Organism Salmonella enterica subsp. enterica serovar Heidelberg str. SL476

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2017074..2017177 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2017072..2017215 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 2017072..2017215 + 144 NuclAT_1 - Antitoxin
- 2017074..2017177 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T23004 NC_011083:c2017177-2017074 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT23004 NC_011083:2017072-2017215 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References