Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2146900..2147068 | Replicon | chromosome |
| Accession | NZ_CP090078 | ||
| Organism | Klebsiella michiganensis strain KM41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2146958..2147061 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2146900..2147068 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LW125_RS10185 | 2142027..2144087 | + | 2061 | WP_009652043.1 | oligopeptidase B | - |
| LW125_RS10190 | 2144094..2144753 | - | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| LW125_RS10195 | 2144832..2145062 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LW125_RS10200 | 2145198..2145572 | + | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| LW125_RS10205 | 2145577..2146446 | + | 870 | WP_004852088.1 | copper homeostasis membrane protein CopD | - |
| LW125_RS10210 | 2146463..2146801 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2146900..2147068 | - | 169 | - | - | Antitoxin |
| - | 2146958..2147061 | + | 104 | - | - | Toxin |
| LW125_RS10215 | 2147186..2148145 | - | 960 | WP_200535541.1 | spore coat protein U domain-containing protein | - |
| LW125_RS10220 | 2148160..2150490 | - | 2331 | WP_004852083.1 | fimbria/pilus outer membrane usher protein | - |
| LW125_RS10225 | 2150493..2151257 | - | 765 | WP_004852081.1 | fimbria/pilus periplasmic chaperone | - |
| LW125_RS10230 | 2151276..2151794 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T230010 NZ_CP090078:2146958-2147061 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT230010 NZ_CP090078:c2147068-2146900 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
