Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 3272570..3273295 Replicon chromosome
Accession NZ_CP090065
Organism Pectobacterium polonicum strain BY21311

Toxin (Protein)


Gene name ykfI Uniprot ID -
Locus tag LW347_RS14775 Protein ID WP_258882731.1
Coordinates 3272975..3273295 (+) Length 107 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID -
Locus tag LW347_RS14770 Protein ID WP_180775493.1
Coordinates 3272570..3272905 (+) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LW347_RS14735 (LW347_14715) 3267602..3268396 + 795 WP_258882728.1 hypothetical protein -
LW347_RS14740 (LW347_14720) 3268520..3269395 + 876 WP_258882729.1 GTPase family protein -
LW347_RS14745 (LW347_14725) 3269764..3270462 + 699 WP_121328592.1 WYL domain-containing protein -
LW347_RS14750 (LW347_14730) 3270641..3271213 + 573 WP_233948122.1 hypothetical protein -
LW347_RS14755 (LW347_14735) 3271249..3271722 + 474 WP_258882730.1 hypothetical protein -
LW347_RS14760 (LW347_14740) 3271739..3271972 + 234 WP_039494636.1 membrane protein -
LW347_RS14765 (LW347_14745) 3272057..3272530 + 474 WP_180775494.1 DNA repair protein RadC -
LW347_RS14770 (LW347_14750) 3272570..3272905 + 336 WP_180775493.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
LW347_RS14775 (LW347_14755) 3272975..3273295 + 321 WP_258882731.1 toxin Toxin
LW347_RS14780 (LW347_14760) 3273413..3274246 + 834 WP_258882732.1 DUF4942 domain-containing protein -
LW347_RS14785 (LW347_14765) 3274807..3277191 + 2385 WP_258882733.1 dynamin family protein -
LW347_RS14790 (LW347_14770) 3277188..3278093 + 906 WP_258882734.1 YjcZ-like family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-105)

Antitoxin

Antitoxin CbeA

(7-105)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12083.82 Da        Isoelectric Point: 5.0744

>T229996 WP_258882731.1 NZ_CP090065:3272975-3273295 [Pectobacterium polonicum]
MQTIPAIPPREDNHCPSPVAVWQQLLSYLLEKHYGLTLNDTPLCEENVIQEHIDAGVTLVNAVNFLVEKYELVRIDRNGF
NWQEQSPFLTAVDVLRARRATSLLKA

Download         Length: 321 bp

>T229996 NZ_CP124657:c4922052-4921297 [Pseudomonas aeruginosa]
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12377.06 Da        Isoelectric Point: 4.7904

>AT229996 WP_180775493.1 NZ_CP090065:3272570-3272905 [Pectobacterium polonicum]
MPSSDTPEWGLKCAITPRFGARLVQEGDYLHYLADRASFVGTFSKTAAQSLERCFPELIKQLENKLQTGELNPRQQGCII
LHCNEWTCEADTLGSVGYVYIVIYPFSAAAE

Download         Length: 336 bp

>AT229996 NZ_CP124657:c4922555-4922187 [Pseudomonas aeruginosa]
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References