Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1973672..1973817 Replicon
Accession NC_011080
Organism Salmonella enterica subsp. enterica serovar Newport str. SL254

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1973674..1973777 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1973672..1973817 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1973672..1973817 + 146 NuclAT_1 - Antitoxin
- 1973674..1973777 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T22995 NC_011080:c1973777-1973674 [Salmonella enterica subsp. enterica serovar Newport str. SL254]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT22995 NC_011080:1973672-1973817 [Salmonella enterica subsp. enterica serovar Newport str. SL254]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References