Detailed information of TA system TA229891

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): omega-epsilon-zeta/-
• Location: 4151303..4152869
• Replicon: chromosome
• Accession: NZ_CP089999
• Organism: Xanthomonas translucens strain B8GF

Toxin (Protein)

• Gene name: avrRxo1
• Uniprot ID: -
• Locus tag: LV507_RS18055
• Protein ID: WP_003480647.1
• Coordinates: 4151303..4152559 (+)
• Length: 419 a.a.

Antitoxin (Protein)

• Gene name: arc1
• Uniprot ID: -
• Locus tag: LV507_RS18060
• Protein ID: WP_003480646.1
• Coordinates: 4152573..4152869 (+)
• Length: 99 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LV507_RS18045 (LV507_18045)	4148614..4149555	-	942	WP_003465367.1	alpha-E domain-containing protein	-
LV507_RS18050 (LV507_18050)	4149555..4151003	-	1449	WP_003480648.1	circularly permuted type 2 ATP-grasp protein	-
LV507_RS18055 (LV507_18055)	4151303..4152559	+	1257	WP_003480647.1	XopAJ/AvrRxo1 family type III secretion system effector zeta toxin	Toxin
LV507_RS18060 (LV507_18060)	4152573..4152869	+	297	WP_003480646.1	hypothetical protein	Antitoxin
LV507_RS18065 (LV507_18065)	4153042..4153317	-	276	WP_128809232.1	hypothetical protein	-
LV507_RS18070 (LV507_18070)	4153398..4153751	-	354	WP_003480645.1	dihydroneopterin aldolase	-
LV507_RS18075 (LV507_18075)	4153744..4154892	-	1149	WP_058360827.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
LV507_RS18080 (LV507_18080)	4155014..4155229	+	216	WP_003465342.1	30S ribosomal protein S21	-
LV507_RS18085 (LV507_18085)	4155509..4155958	+	450	WP_058360826.1	GatB/YqeY domain-containing protein	-
LV507_RS18090 (LV507_18090)	4156092..4157006	+	915	WP_003465336.1	YihY/virulence factor BrkB family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Zeta toxin domain (148-285)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 419 a.a.
• Molecular weight: 45042.67 Da
• Isoelectric Point: 6.6145

>T229891 WP_003480647.1 NZ_CP089999:4151303-4152559 [Xanthomonas translucens]
MKGKISNACKPDITPILVDGLASTATQGAADDSASRLPQQALLDGLQERPQALKKSNSADWSARTLPQWAPGPGTSSKAL
LIQSPPHPTSSDEMFGLGELPAPGKARWEYLTKTENWHPERQELHSRLLSQARTASLRLAESIESDGYPPTLFALRGNTA
TGKTRIATKTIPVLANALKKSSGGGCINPDIFKRSLAESQGEAMKLSSAQVHAESCVLADRLENELRSQRTTSGAMASIL
VDKRLANTHEVDSYVSLAKETGRKVELCDIDAPLERSLMGVLQRSPGGDDPRPPYVAVANGFSTVRSNRLDVIDRFLSNP
TLGSYRLFGTNEKGEKVMVASVADGELSIHDPQLYESITAPEDFNSGDKGEQVIDTALIDRLSNSIDDPKRATDARAALE
KYKGMTWSNALAAHSSLI

Nucleotide

• Length: 1257 bp

>T229891 NZ_CP124624:c6054457-6054164 [Pseudomonas aeruginosa]
ATGAACAAGACCAAGCTGAACATGCGGCCCTTCGATGCGGCCCACTACTTGAACAATGAGGAAGAGATGGCCGCCTACCT
CGACGTGATTCTGGAAGACAACGACCCGGCGCTGCTGGCCGTTGCTCTGGGCGATATCGCCCGTGCACGCGGCATGACCG
AGCTGGCCCGTAAAACCGGCCTGTCGCGTGAGAGCCTGTACAAGAGCCTGTCCGGCGAGCGCGTGCCGAGCACTGAAACG
CTGCTGAAGGTCATTCATGCCCTGGGCTTCAAGCTGACGGTCTCCGCCGCTTGA

Antitoxin

Protein

• Length: 99 a.a.
• Molecular weight: 11088.54 Da
• Isoelectric Point: 7.3576

>AT229891 WP_003480646.1 NZ_CP089999:4152573-4152869 [Xanthomonas translucens]
MTHLKGADALALHKKLKERNASLRSAELDSAKALAHESGKERFNLEKLESICDTTQAGRITDPNDRQAIYEQMYYVEHPK
VSTLQEFARIVVTISSWS

Nucleotide

• Length: 297 bp

>AT229891 NZ_CP124624:c6054748-6054458 [Pseudomonas aeruginosa]
ATGTACTCCATTATCGAAACCGAGGCGTTCAGCGACTGGCTGAACGGCCTGAAAGATACGGTCACCCGCATGCGCTTGAT
CAAGCGTTTGCAGCGCGCAAGCCTGGGCAACCTGGGCGATGTGAAGCCGGTTGGTGAAGGGGTGTATGAAATGCGCGAGT
TTTTCGGCCCTGGCTGGCGCATGTACTACGTGCAGCAGGGCGATGTGCTGCTGATCATGCTGGGCGGTGGCGACAAATCC
AGCCAGCAGCGTGATATCGAGCGGGCAATTCAGTTGTCCAAGGAGCTCTGA