Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 3660114..3660619 | Replicon | chromosome |
Accession | NZ_CP089999 | ||
Organism | Xanthomonas translucens strain B8GF |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A1C3TRG2 |
Locus tag | LV507_RS16025 | Protein ID | WP_003479798.1 |
Coordinates | 3660362..3660619 (+) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | relE | Uniprot ID | A0A1C3TRJ9 |
Locus tag | LV507_RS16020 | Protein ID | WP_003468816.1 |
Coordinates | 3660114..3660365 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LV507_RS15995 (LV507_15995) | 3655185..3656420 | + | 1236 | WP_065899003.1 | citrate synthase family protein | - |
LV507_RS16000 (LV507_16000) | 3657122..3658141 | + | 1020 | WP_229017866.1 | hypothetical protein | - |
LV507_RS16005 (LV507_16005) | 3658177..3658620 | - | 444 | WP_003479801.1 | nuclear transport factor 2 family protein | - |
LV507_RS16010 (LV507_16010) | 3658742..3659464 | + | 723 | WP_003479800.1 | helix-turn-helix transcriptional regulator | - |
LV507_RS16015 (LV507_16015) | 3659461..3660005 | - | 545 | Protein_3156 | endonuclease | - |
LV507_RS16020 (LV507_16020) | 3660114..3660365 | + | 252 | WP_003468816.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
LV507_RS16025 (LV507_16025) | 3660362..3660619 | + | 258 | WP_003479798.1 | Txe/YoeB family addiction module toxin | Toxin |
LV507_RS16035 (LV507_16035) | 3661254..3661607 | - | 354 | WP_003479797.1 | PilZ domain-containing protein | - |
LV507_RS16040 (LV507_16040) | 3661604..3662581 | - | 978 | WP_003479796.1 | DNA polymerase III subunit delta' | - |
LV507_RS16045 (LV507_16045) | 3662578..3663246 | - | 669 | WP_003479795.1 | dTMP kinase | - |
LV507_RS16050 (LV507_16050) | 3663243..3664310 | - | 1068 | WP_172837969.1 | endolytic transglycosylase MltG | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 10156.61 Da Isoelectric Point: 9.7381
>T229890 WP_003479798.1 NZ_CP089999:3660362-3660619 [Xanthomonas translucens]
VTLQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPERLRHALAGYWSRRINDEHRIVYKVEAGVLLIAQV
RYHYA
VTLQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPERLRHALAGYWSRRINDEHRIVYKVEAGVLLIAQV
RYHYA
Download Length: 258 bp
>T229890 NZ_CP124624:c5441903-5441625 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGCTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGCTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9281.56 Da Isoelectric Point: 5.1186
>AT229890 WP_003468816.1 NZ_CP089999:3660114-3660365 [Xanthomonas translucens]
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETAYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETAYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE
Download Length: 252 bp
>AT229890 NZ_CP124624:c5441613-5441308 [Pseudomonas aeruginosa]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTACTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCAGGGATAG
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTACTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCAGGGATAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1C3TRG2 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1C3TRJ9 |