Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4112974..4113119 | Replicon | chromosome |
| Accession | NZ_CP089989 | ||
| Organism | Klebsiella pneumoniae strain LZKP00003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4113010..4113112 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4112974..4113119 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUR00_RS19680 (LUR00_19680) | 4108104..4110164 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| LUR00_RS19685 (LUR00_19685) | 4110168..4110827 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| LUR00_RS19690 (LUR00_19690) | 4110906..4111136 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LUR00_RS19695 (LUR00_19695) | 4111249..4111623 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LUR00_RS19700 (LUR00_19700) | 4111627..4112496 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| LUR00_RS19705 (LUR00_19705) | 4112513..4112851 | + | 339 | WP_180812522.1 | YebY family protein | - |
| - | 4112974..4113119 | - | 146 | - | - | Antitoxin |
| - | 4113010..4113112 | + | 103 | - | - | Toxin |
| LUR00_RS19710 (LUR00_19710) | 4113487..4113630 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LUR00_RS19715 (LUR00_19715) | 4113735..4114703 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LUR00_RS19720 (LUR00_19720) | 4114860..4115513 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| LUR00_RS19725 (LUR00_19725) | 4115510..4115701 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LUR00_RS19730 (LUR00_19730) | 4115799..4116038 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LUR00_RS19735 (LUR00_19735) | 4116154..4117587 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229871 NZ_CP089989:4113010-4113112 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229871 NZ_CP089989:c4113119-4112974 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
