Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1864057..1864202 | Replicon | chromosome |
| Accession | NZ_CP089986 | ||
| Organism | Klebsiella pneumoniae strain LZKP00001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1864093..1864195 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1864057..1864202 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUA09_RS08995 (LUA09_08995) | 1859187..1861247 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| LUA09_RS09000 (LUA09_09000) | 1861251..1861910 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LUA09_RS09005 (LUA09_09005) | 1861989..1862219 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LUA09_RS09010 (LUA09_09010) | 1862332..1862706 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LUA09_RS09015 (LUA09_09015) | 1862710..1863579 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| LUA09_RS09020 (LUA09_09020) | 1863596..1863934 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1864057..1864202 | - | 146 | - | - | Antitoxin |
| - | 1864093..1864195 | + | 103 | - | - | Toxin |
| LUA09_RS09025 (LUA09_09025) | 1864570..1864713 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LUA09_RS09030 (LUA09_09030) | 1864818..1865786 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LUA09_RS09035 (LUA09_09035) | 1865943..1866596 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| LUA09_RS09040 (LUA09_09040) | 1866593..1866784 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LUA09_RS09045 (LUA09_09045) | 1866882..1867121 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LUA09_RS09050 (LUA09_09050) | 1867237..1868670 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229848 NZ_CP089986:1864093-1864195 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229848 NZ_CP089986:c1864202-1864057 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
