Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 4865114..4865754 Replicon chromosome
Accession NZ_CP089985
Organism Pseudomonas sp. HN11

Toxin (Protein)


Gene name vagD Uniprot ID -
Locus tag LVW35_RS22140 Protein ID WP_233892039.1
Coordinates 4865114..4865527 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID -
Locus tag LVW35_RS22145 Protein ID WP_233892040.1
Coordinates 4865524..4865754 (-) Length 77 a.a.

Genomic Context


LVW35_RS22135LVW35_RS22150LVW35_RS22155LVW35_RS22160LVW35_RS22130LVW35_RS22140LVW35_RS22145LVW35_RS22165LVW35_RS22170LVW35_RS22175
Location: 4864697..4864966 (270 bp)
Type: Others
Protein ID: WP_233892038.1
Location: 4866239..4867489 (1251 bp)
Type: Others
Protein ID: WP_233892041.1
Location: 4867579..4867725 (147 bp)
Type: Others
Protein ID: Protein_4368
Location: 4867798..4868442 (645 bp)
Type: Others
Protein ID: WP_122728393.1
Location: 4862343..4864298 (1956 bp)
Type: Others
Protein ID: WP_033902234.1
Location: 4865114..4865527 (414 bp)
Type: Toxin
Protein ID: WP_233892039.1
Location: 4865524..4865754 (231 bp)
Type: Antitoxin
Protein ID: WP_233892040.1
Location: 4868469..4868873 (405 bp)
Type: Others
Protein ID: WP_043205781.1
Location: 4868866..4869105 (240 bp)
Type: Others
Protein ID: WP_080589294.1
Location: 4869479..4870438 (960 bp)
Type: Others
Protein ID: WP_233896534.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LVW35_RS22130 (LVW35_22130)4862343..4864298-1956WP_033902234.1acetate--CoA ligase-
LVW35_RS22135 (LVW35_22135)4864697..4864966+270WP_233892038.1DUF2790 domain-containing protein-
LVW35_RS22140 (LVW35_22140)4865114..4865527-414WP_233892039.1type II toxin-antitoxin system VapC family toxinToxin
LVW35_RS22145 (LVW35_22145)4865524..4865754-231WP_233892040.1type II toxin-antitoxin system VapB family antitoxinAntitoxin
LVW35_RS22150 (LVW35_22150)4866239..4867489+1251WP_233892041.1ribonucleotide-diphosphate reductase subunit beta-
LVW35_RS22155 (LVW35_22155)4867579..4867725+147Protein_4368HNH endonuclease-
LVW35_RS22160 (LVW35_22160)4867798..4868442+645WP_122728393.1HAD-IB family hydrolase-
LVW35_RS22165 (LVW35_22165)4868469..4868873-405WP_043205781.1type II toxin-antitoxin system VapC family toxin-
LVW35_RS22170 (LVW35_22170)4868866..4869105-240WP_080589294.1type II toxin-antitoxin system VapB family antitoxin-
LVW35_RS22175 (LVW35_22175)4869479..4870438-960WP_233896534.1LysR family transcriptional regulator-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-128)

Antitoxin

(7-52)


Sequences


Toxin        


Download         Length: 138 a.a.        Molecular weight: 15216.66 Da        Isoelectric Point: 7.1885

>T229842 WP_233892039.1 NZ_CP089985:c4865527-4865114 [Pseudomonas sp. HN11]
MTTYMLDTCICSFIMRERPECVLNRLSAEVARNNRIVISAITYSEMRYGQIGKKASPKHKVLVDDFVKRLDEVLPWGLAA
VDATVNVKLSLTEMGLVIGQNDTAIAGHAIAAGCILVTNNVREFSRVTGLSYEDWVH

Download         Length: 414 bp

>T229842 NZ_CP124543:c4389318-4389019 [Halotia branconii CENA392]
ATGTCATTATTTCGCCTTACTGAATTAGCCAAGCAGGACTTACTATCAATCGGTCGTTACACTCAAAAAACGTGGGGAAT
TGAGCAAAGAAACCGTTATCTTACTATGTTGGACGACTGCTTTCAAATCTTGGCACGAAATCCACACAAAGGACGTGCTT
GTGATGAGATTAGCCCAGGATATCGGAAATACCATATTGGACGACATTTGATATTTTATCGGGAAACCGACGAATATATT
GATATCGTTCGCATTTTGCACGACCGCATGGATATAGAGTCTCATTTCAATAAAGATTAA

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8723.76 Da        Isoelectric Point: 4.4230

>AT229842 WP_233892040.1 NZ_CP089985:c4865754-4865524 [Pseudomonas sp. HN11]
MRTVSIFKNGRNQAIRLPNDMAYEGVGELEITRNGDTITLRPVRPSWTSFAELPKADEDFLQERPDVIGDEDRFNL

Download         Length: 231 bp

>AT229842 NZ_CP124543:c4389555-4389322 [Halotia branconii CENA392]
ATGCAAAAAAATACAAGTGTTACCTTGGGGGAGCATTTTGAAGCGTTTATCGCCAGTCAGATCGAAAGCGGACGTTTCAA
CAGTGCCAGTGAGGCAATTCGGGCTGGACTGCGCTTGTTAGAAGAGCGAGAAATAAAGCTTGCCGCTTTGCAACGCGCTT
TAACAGAAGGGGAAAACAGCGGATTTACTGACTATTCTCTCTCAGGATTGCTTGCAGAACTTGACCGTGAATAG

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
No matching records found


Antitoxin

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Source
ID
Structure
No matching records found

References