Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vagCD/VapC-VagC |
Location | 4865114..4865754 | Replicon | chromosome |
Accession | NZ_CP089985 | ||
Organism | Pseudomonas sp. HN11 |
Toxin (Protein)
Gene name | vagD | Uniprot ID | - |
Locus tag | LVW35_RS22140 | Protein ID | WP_233892039.1 |
Coordinates | 4865114..4865527 (-) | Length | 138 a.a. |
Antitoxin (Protein)
Gene name | vagC | Uniprot ID | - |
Locus tag | LVW35_RS22145 | Protein ID | WP_233892040.1 |
Coordinates | 4865524..4865754 (-) | Length | 77 a.a. |
Genomic Context
Location: 4864697..4864966 (270 bp)
Type: Others
Protein ID: WP_233892038.1
Type: Others
Protein ID: WP_233892038.1
Location: 4866239..4867489 (1251 bp)
Type: Others
Protein ID: WP_233892041.1
Type: Others
Protein ID: WP_233892041.1
Location: 4867579..4867725 (147 bp)
Type: Others
Protein ID: Protein_4368
Type: Others
Protein ID: Protein_4368
Location: 4867798..4868442 (645 bp)
Type: Others
Protein ID: WP_122728393.1
Type: Others
Protein ID: WP_122728393.1
Location: 4862343..4864298 (1956 bp)
Type: Others
Protein ID: WP_033902234.1
Type: Others
Protein ID: WP_033902234.1
Location: 4865114..4865527 (414 bp)
Type: Toxin
Protein ID: WP_233892039.1
Type: Toxin
Protein ID: WP_233892039.1
Location: 4865524..4865754 (231 bp)
Type: Antitoxin
Protein ID: WP_233892040.1
Type: Antitoxin
Protein ID: WP_233892040.1
Location: 4868469..4868873 (405 bp)
Type: Others
Protein ID: WP_043205781.1
Type: Others
Protein ID: WP_043205781.1
Location: 4868866..4869105 (240 bp)
Type: Others
Protein ID: WP_080589294.1
Type: Others
Protein ID: WP_080589294.1
Location: 4869479..4870438 (960 bp)
Type: Others
Protein ID: WP_233896534.1
Type: Others
Protein ID: WP_233896534.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LVW35_RS22130 (LVW35_22130) | 4862343..4864298 | - | 1956 | WP_033902234.1 | acetate--CoA ligase | - |
LVW35_RS22135 (LVW35_22135) | 4864697..4864966 | + | 270 | WP_233892038.1 | DUF2790 domain-containing protein | - |
LVW35_RS22140 (LVW35_22140) | 4865114..4865527 | - | 414 | WP_233892039.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
LVW35_RS22145 (LVW35_22145) | 4865524..4865754 | - | 231 | WP_233892040.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
LVW35_RS22150 (LVW35_22150) | 4866239..4867489 | + | 1251 | WP_233892041.1 | ribonucleotide-diphosphate reductase subunit beta | - |
LVW35_RS22155 (LVW35_22155) | 4867579..4867725 | + | 147 | Protein_4368 | HNH endonuclease | - |
LVW35_RS22160 (LVW35_22160) | 4867798..4868442 | + | 645 | WP_122728393.1 | HAD-IB family hydrolase | - |
LVW35_RS22165 (LVW35_22165) | 4868469..4868873 | - | 405 | WP_043205781.1 | type II toxin-antitoxin system VapC family toxin | - |
LVW35_RS22170 (LVW35_22170) | 4868866..4869105 | - | 240 | WP_080589294.1 | type II toxin-antitoxin system VapB family antitoxin | - |
LVW35_RS22175 (LVW35_22175) | 4869479..4870438 | - | 960 | WP_233896534.1 | LysR family transcriptional regulator | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 138 a.a. Molecular weight: 15216.66 Da Isoelectric Point: 7.1885
>T229842 WP_233892039.1 NZ_CP089985:c4865527-4865114 [Pseudomonas sp. HN11]
MTTYMLDTCICSFIMRERPECVLNRLSAEVARNNRIVISAITYSEMRYGQIGKKASPKHKVLVDDFVKRLDEVLPWGLAA
VDATVNVKLSLTEMGLVIGQNDTAIAGHAIAAGCILVTNNVREFSRVTGLSYEDWVH
MTTYMLDTCICSFIMRERPECVLNRLSAEVARNNRIVISAITYSEMRYGQIGKKASPKHKVLVDDFVKRLDEVLPWGLAA
VDATVNVKLSLTEMGLVIGQNDTAIAGHAIAAGCILVTNNVREFSRVTGLSYEDWVH
Download Length: 414 bp
>T229842 NZ_CP124543:c4389318-4389019 [Halotia branconii CENA392]
ATGTCATTATTTCGCCTTACTGAATTAGCCAAGCAGGACTTACTATCAATCGGTCGTTACACTCAAAAAACGTGGGGAAT
TGAGCAAAGAAACCGTTATCTTACTATGTTGGACGACTGCTTTCAAATCTTGGCACGAAATCCACACAAAGGACGTGCTT
GTGATGAGATTAGCCCAGGATATCGGAAATACCATATTGGACGACATTTGATATTTTATCGGGAAACCGACGAATATATT
GATATCGTTCGCATTTTGCACGACCGCATGGATATAGAGTCTCATTTCAATAAAGATTAA
ATGTCATTATTTCGCCTTACTGAATTAGCCAAGCAGGACTTACTATCAATCGGTCGTTACACTCAAAAAACGTGGGGAAT
TGAGCAAAGAAACCGTTATCTTACTATGTTGGACGACTGCTTTCAAATCTTGGCACGAAATCCACACAAAGGACGTGCTT
GTGATGAGATTAGCCCAGGATATCGGAAATACCATATTGGACGACATTTGATATTTTATCGGGAAACCGACGAATATATT
GATATCGTTCGCATTTTGCACGACCGCATGGATATAGAGTCTCATTTCAATAAAGATTAA
Antitoxin
Download Length: 77 a.a. Molecular weight: 8723.76 Da Isoelectric Point: 4.4230
>AT229842 WP_233892040.1 NZ_CP089985:c4865754-4865524 [Pseudomonas sp. HN11]
MRTVSIFKNGRNQAIRLPNDMAYEGVGELEITRNGDTITLRPVRPSWTSFAELPKADEDFLQERPDVIGDEDRFNL
MRTVSIFKNGRNQAIRLPNDMAYEGVGELEITRNGDTITLRPVRPSWTSFAELPKADEDFLQERPDVIGDEDRFNL
Download Length: 231 bp
>AT229842 NZ_CP124543:c4389555-4389322 [Halotia branconii CENA392]
ATGCAAAAAAATACAAGTGTTACCTTGGGGGAGCATTTTGAAGCGTTTATCGCCAGTCAGATCGAAAGCGGACGTTTCAA
CAGTGCCAGTGAGGCAATTCGGGCTGGACTGCGCTTGTTAGAAGAGCGAGAAATAAAGCTTGCCGCTTTGCAACGCGCTT
TAACAGAAGGGGAAAACAGCGGATTTACTGACTATTCTCTCTCAGGATTGCTTGCAGAACTTGACCGTGAATAG
ATGCAAAAAAATACAAGTGTTACCTTGGGGGAGCATTTTGAAGCGTTTATCGCCAGTCAGATCGAAAGCGGACGTTTCAA
CAGTGCCAGTGAGGCAATTCGGGCTGGACTGCGCTTGTTAGAAGAGCGAGAAATAAAGCTTGCCGCTTTGCAACGCGCTT
TAACAGAAGGGGAAAACAGCGGATTTACTGACTATTCTCTCTCAGGATTGCTTGCAGAACTTGACCGTGAATAG