Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-RelB
Location 319357..319868 Replicon chromosome
Accession NZ_CP089979
Organism Fulvivirga sp. W9P-11

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LVD16_RS01455 Protein ID WP_233771808.1
Coordinates 319357..319614 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag LVD16_RS01460 Protein ID WP_233771809.1
Coordinates 319611..319868 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LVD16_RS01440 (LVD16_01440) 316791..317975 + 1185 WP_233771805.1 DUF4105 domain-containing protein -
LVD16_RS01445 (LVD16_01445) 317956..318387 + 432 WP_233771806.1 SRPBCC domain-containing protein -
LVD16_RS01450 (LVD16_01450) 318384..319346 + 963 WP_233771807.1 YafY family protein -
LVD16_RS01455 (LVD16_01455) 319357..319614 - 258 WP_233771808.1 Txe/YoeB family addiction module toxin Toxin
LVD16_RS01460 (LVD16_01460) 319611..319868 - 258 WP_233771809.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
LVD16_RS01465 (LVD16_01465) 320429..321739 + 1311 WP_233771810.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase -
LVD16_RS01470 (LVD16_01470) 321717..322769 + 1053 WP_233771811.1 homoserine O-acetyltransferase -
LVD16_RS01475 (LVD16_01475) 322776..323990 + 1215 WP_233771812.1 homoserine dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10313.85 Da        Isoelectric Point: 6.4598

>T229833 WP_233771808.1 NZ_CP089979:c319614-319357 [Fulvivirga sp. W9P-11]
MIITFTENAWEDYLYWQQVDKKMIKKINALIKGIQREPFEGIGKPEPLKYDLAGFWSRRIDQEHRLVYQVNDGELLIYAC
RYHYD

Download         Length: 258 bp

>T229833 NZ_CP124534:c1234701-1234210 [Xanthomonas campestris]
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
TGCTGGCAAGCGCATCTTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCCA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGTCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9622.99 Da        Isoelectric Point: 8.5161

>AT229833 WP_233771809.1 NZ_CP089979:c319868-319611 [Fulvivirga sp. W9P-11]
MIAANFSEFRTGLKKFLDQVEDDNQTLIIKRKSGKGSVVISLDEYNSIMETLHLLSSRKNSDRLYESIQQMKSGKTVSPK
LDELG

Download         Length: 258 bp

>AT229833 NZ_CP124534:c1234988-1234698 [Xanthomonas campestris]
ATGTCCACACCCAACACTACGCCTGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACCGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTCATCACGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References