Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-yefM/YoeB-RelB |
| Location | 82433..82941 | Replicon | chromosome |
| Accession | NZ_CP089979 | ||
| Organism | Fulvivirga sp. W9P-11 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LVD16_RS00365 | Protein ID | WP_233771603.1 |
| Coordinates | 82433..82687 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | LVD16_RS00370 | Protein ID | WP_233771604.1 |
| Coordinates | 82687..82941 (-) | Length | 85 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVD16_RS00345 (LVD16_00345) | 78217..80595 | + | 2379 | WP_233771599.1 | ABC transporter permease | - |
| LVD16_RS00350 (LVD16_00350) | 80761..81153 | - | 393 | WP_233771600.1 | hypothetical protein | - |
| LVD16_RS00355 (LVD16_00355) | 81483..81638 | - | 156 | WP_233771601.1 | hypothetical protein | - |
| LVD16_RS00360 (LVD16_00360) | 82102..82380 | - | 279 | WP_233771602.1 | PASTA domain-containing protein | - |
| LVD16_RS00365 (LVD16_00365) | 82433..82687 | - | 255 | WP_233771603.1 | Txe/YoeB family addiction module toxin | Toxin |
| LVD16_RS00370 (LVD16_00370) | 82687..82941 | - | 255 | WP_233771604.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| LVD16_RS00375 (LVD16_00375) | 83131..84450 | - | 1320 | WP_233770635.1 | IS110 family transposase | - |
| LVD16_RS00380 (LVD16_00380) | 85141..85407 | - | 267 | WP_233769533.1 | hypothetical protein | - |
| LVD16_RS00385 (LVD16_00385) | 85385..86464 | - | 1080 | WP_233769731.1 | IS110 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10388.97 Da Isoelectric Point: 9.4795
>T229832 WP_233771603.1 NZ_CP089979:c82687-82433 [Fulvivirga sp. W9P-11]
MEIIFLSPAWEDYIYWQQTDKKILRKINELIRQCQRTPFEGIGKPEPLRGNLSGWWSRRINHEHRLVYKVENESLYILQC
RRHY
MEIIFLSPAWEDYIYWQQTDKKILRKINELIRQCQRTPFEGIGKPEPLRGNLSGWWSRRINHEHRLVYKVENESLYILQC
RRHY
Download Length: 255 bp
>T229832 NZ_CP124533:c4691948-4691796 [Xanthomonas campestris]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTCTCGGCCGGCATGATGACTGGCTGTAACACCATGGCTGGTGC
CGGAAAGGACATGCAGGGTGCGGGTGACAAGGTCGAGAAGACCGCCGACAAATGCAGCGACGGTAAGTGCTAA
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTCTCGGCCGGCATGATGACTGGCTGTAACACCATGGCTGGTGC
CGGAAAGGACATGCAGGGTGCGGGTGACAAGGTCGAGAAGACCGCCGACAAATGCAGCGACGGTAAGTGCTAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9644.80 Da Isoelectric Point: 4.8307
>AT229832 WP_233771604.1 NZ_CP089979:c82941-82687 [Fulvivirga sp. W9P-11]
MEVTNYSNFRQNLKSFLDKVFVSHDPLYVSRANGEDVVVMSKSDYESIQETLYLLSSPKNADRLAKGIEEYEHGKGLKKD
LIED
MEVTNYSNFRQNLKSFLDKVFVSHDPLYVSRANGEDVVVMSKSDYESIQETLYLLSSPKNADRLAKGIEEYEHGKGLKKD
LIED
Download Length: 255 bp
>AT229832 NZ_CP124533:c4691719-4691585 [Xanthomonas campestris]
ATGAAGCGTGCAATTGCATTGTTGGTGCTGTCGATGTTGTCGGTGGGAATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGCAGGGCGCTGGCGAGAAGGTGGAAGACGCCGCGCGCAAGTGA
ATGAAGCGTGCAATTGCATTGTTGGTGCTGTCGATGTTGTCGGTGGGAATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGCAGGGCGCTGGCGAGAAGGTGGAAGACGCCGCGCGCAAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|