Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1844659..1844804 | Replicon | chromosome |
| Accession | NZ_CP089959 | ||
| Organism | Klebsiella pneumoniae strain KP403 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1844695..1844797 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1844659..1844804 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVQ74_RS08955 (LVQ74_08945) | 1839789..1841849 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVQ74_RS08960 (LVQ74_08950) | 1841853..1842512 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVQ74_RS08965 (LVQ74_08955) | 1842591..1842821 | - | 231 | WP_048254886.1 | DNA polymerase III subunit theta | - |
| LVQ74_RS08970 (LVQ74_08960) | 1842934..1843308 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVQ74_RS08975 (LVQ74_08965) | 1843312..1844181 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| LVQ74_RS08980 (LVQ74_08970) | 1844198..1844536 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1844659..1844804 | - | 146 | - | - | Antitoxin |
| - | 1844695..1844797 | + | 103 | - | - | Toxin |
| LVQ74_RS08985 (LVQ74_08975) | 1845172..1845315 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVQ74_RS08990 (LVQ74_08980) | 1845420..1846388 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVQ74_RS08995 (LVQ74_08985) | 1846545..1847198 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| LVQ74_RS09000 (LVQ74_08990) | 1847195..1847386 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVQ74_RS09005 (LVQ74_08995) | 1847484..1847723 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVQ74_RS09010 (LVQ74_09000) | 1847839..1849272 | - | 1434 | WP_071081310.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229800 NZ_CP089959:1844695-1844797 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229800 NZ_CP089959:c1844804-1844659 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
