Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2499470..2499560 | Replicon | chromosome |
| Accession | NZ_CP089940 | ||
| Organism | Erwinia tracheiphila strain BuffGH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2499470..2499559 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2499470..2499560 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LU631_RS13305 (LU631_13305) | 2495790..2496476 | - | 687 | WP_020323256.1 | exodeoxyribonuclease X | - |
| LU631_RS13310 (LU631_13310) | 2496481..2497242 | - | 762 | WP_020323255.1 | carbon-nitrogen hydrolase family protein | - |
| LU631_RS13315 (LU631_13315) | 2497327..2497557 | - | 231 | WP_020323254.1 | DNA polymerase III subunit theta | - |
| LU631_RS13320 (LU631_13320) | 2497724..2498089 | + | 366 | WP_152664275.1 | CopC domain-containing protein YobA | - |
| LU631_RS13325 (LU631_13325) | 2498127..2498966 | + | 840 | WP_232426917.1 | copper homeostasis membrane protein CopD | - |
| LU631_RS13330 (LU631_13330) | 2499021..2499371 | + | 351 | WP_020323251.1 | YebY family protein | - |
| - | 2499470..2499559 | + | 90 | - | - | Toxin |
| - | 2499470..2499560 | - | 91 | - | - | Antitoxin |
| LU631_RS13335 (LU631_13335) | 2499727..2499870 | + | 144 | Protein_2623 | DUF2184 domain-containing protein | - |
| LU631_RS13340 (LU631_13340) | 2499931..2500278 | - | 348 | WP_020323248.1 | DUF1493 family protein | - |
| LU631_RS13345 (LU631_13345) | 2500269..2500564 | - | 296 | Protein_2625 | hypothetical protein | - |
| LU631_RS13350 (LU631_13350) | 2500781..2502089 | - | 1309 | Protein_2626 | MlaD family protein | - |
| LU631_RS13355 (LU631_13355) | 2502483..2502983 | + | 501 | WP_040465820.1 | GAF domain-containing protein | - |
| LU631_RS13360 (LU631_13360) | 2503080..2503766 | + | 687 | WP_020323243.1 | RNA chaperone ProQ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T229751 NZ_CP089940:2499470-2499559 [Erwinia tracheiphila]
AAGCCTGCATTAATGCCAACTTTTAGCGCATGGCTCTGAACAGAGCCATTTCCCTGGACTGAAGACAGGAGTTGTCTTCA
GTCTTTTTTT
AAGCCTGCATTAATGCCAACTTTTAGCGCATGGCTCTGAACAGAGCCATTTCCCTGGACTGAAGACAGGAGTTGTCTTCA
GTCTTTTTTT
Antitoxin
Download Length: 91 bp
>AT229751 NZ_CP089940:c2499560-2499470 [Erwinia tracheiphila]
TAAAAAAAGACTGAAGACAACTCCTGTCTTCAGTCCAGGGAAATGGCTCTGTTCAGAGCCATGCGCTAAAAGTTGGCATT
AATGCAGGCTT
TAAAAAAAGACTGAAGACAACTCCTGTCTTCAGTCCAGGGAAATGGCTCTGTTCAGAGCCATGCGCTAAAAGTTGGCATT
AATGCAGGCTT
