Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE(toxin) |
| Location | 287968..288430 | Replicon | chromosome |
| Accession | NZ_CP089934 | ||
| Organism | Erwinia tracheiphila strain SCR3 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LU632_RS01375 | Protein ID | WP_233479705.1 |
| Coordinates | 287968..288243 (-) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A0M2KKT1 |
| Locus tag | LU632_RS01380 | Protein ID | WP_016192654.1 |
| Coordinates | 288230..288430 (-) | Length | 67 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LU632_RS01345 (LU632_01345) | 283080..283229 | + | 150 | Protein_259 | transposase | - |
| LU632_RS01350 (LU632_01350) | 283363..284469 | - | 1107 | WP_233479702.1 | beta-propeller fold lactonase family protein | - |
| LU632_RS01355 (LU632_01355) | 284466..284777 | - | 312 | WP_016193255.1 | hypothetical protein | - |
| LU632_RS01360 (LU632_01360) | 285077..285673 | - | 597 | WP_016193254.1 | YhgN family NAAT transporter | - |
| LU632_RS01365 (LU632_01365) | 285941..287050 | + | 1110 | WP_233479703.1 | aspartate-semialdehyde dehydrogenase | - |
| LU632_RS01370 (LU632_01370) | 287143..287840 | + | 698 | WP_233479704.1 | IS1 family transposase | - |
| LU632_RS01375 (LU632_01375) | 287968..288243 | - | 276 | WP_233479705.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LU632_RS01380 (LU632_01380) | 288230..288430 | - | 201 | WP_016192654.1 | hypothetical protein | Antitoxin |
| LU632_RS01385 (LU632_01385) | 288727..289080 | + | 354 | WP_016192655.1 | RAQPRD family integrative conjugative element protein | - |
| LU632_RS01390 (LU632_01390) | 289081..289209 | + | 129 | WP_233479706.1 | DUF3262 family protein | - |
| LU632_RS01395 (LU632_01395) | 289246..289623 | + | 378 | Protein_269 | TIGR03745 family integrating conjugative element membrane protein | - |
| LU632_RS01400 (LU632_01400) | 289635..289724 | + | 90 | Protein_270 | DUF3487 family protein | - |
| LU632_RS01405 (LU632_01405) | 289810..290676 | + | 867 | WP_233479707.1 | TIGR03749 family integrating conjugative element protein | - |
| LU632_RS01410 (LU632_01410) | 290685..292199 | + | 1515 | WP_233480720.1 | TIGR03752 family integrating conjugative element protein | - |
| LU632_RS01415 (LU632_01415) | 292211..292471 | + | 261 | WP_152664198.1 | hypothetical protein | - |
| LU632_RS01420 (LU632_01420) | 292458..292862 | + | 405 | WP_233479708.1 | TIGR03751 family conjugal transfer lipoprotein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 287337..287840 | 503 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10729.21 Da Isoelectric Point: 6.2090
>T229726 WP_233479705.1 NZ_CP089934:c288243-287968 [Erwinia tracheiphila]
VQWVKWKESALNDLADIIDYIEQYNPVASRKLHQQIVHVAENLPQHPYLYRPGRVAGTREIVVHPNYLVVYHIDDFEIEI
LGVLHARQEYP
VQWVKWKESALNDLADIIDYIEQYNPVASRKLHQQIVHVAENLPQHPYLYRPGRVAGTREIVVHPNYLVVYHIDDFEIEI
LGVLHARQEYP
Download Length: 276 bp
>T229726 NZ_CP124511:c3792297-3791920 [Escherichia coli]
ATGAAAACATTACCCGACACACACGTACGGGCGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCAACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGGAA
CAATTACAAAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACGATGA
ATGAAAACATTACCCGACACACACGTACGGGCGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCAACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGGAA
CAATTACAAAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACGATGA
Antitoxin
Download Length: 67 a.a. Molecular weight: 7605.66 Da Isoelectric Point: 5.8151
>AT229726 WP_016192654.1 NZ_CP089934:c288430-288230 [Erwinia tracheiphila]
MTTKLSPIVSEFETQEQADSYDRWFRAKVQVALDDPRPGIPHDDAMAKLEAMLEERRTLRAKRAMG
MTTKLSPIVSEFETQEQADSYDRWFRAKVQVALDDPRPGIPHDDAMAKLEAMLEERRTLRAKRAMG
Download Length: 201 bp
>AT229726 NZ_CP124511:c3792754-3792374 [Escherichia coli]
ATGTCGGACACACTCCCCGGAACAACGCTTCCCGACGACAACAAAGACCGCCCCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCAGACCGCGCCGGTATCAGGGGCCGGT
TCAACAATGCGGATGCATACCATCTGGACCAGGCTTTTCCACTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCGAAAGGGCTGACCTGCGATGCCGACACCCTCGAGTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCTGCGACCGAAACGGAAAGTAACCCTCCGGAATAG
ATGTCGGACACACTCCCCGGAACAACGCTTCCCGACGACAACAAAGACCGCCCCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCAGACCGCGCCGGTATCAGGGGCCGGT
TCAACAATGCGGATGCATACCATCTGGACCAGGCTTTTCCACTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCGAAAGGGCTGACCTGCGATGCCGACACCCTCGAGTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCTGCGACCGAAACGGAAAGTAACCCTCCGGAATAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|