Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 31377..31466 | Replicon | chromosome |
| Accession | NZ_CP089919 | ||
| Organism | Rahnella victoriana strain JZ-GX1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 31377..31466 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 31377..31466 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9880_RS00190 (J9880_00190) | 27714..28184 | + | 471 | WP_232769919.1 | phage tail protein | - |
| J9880_RS00195 (J9880_00195) | 28181..29335 | + | 1155 | WP_232769940.1 | phage late control D family protein | - |
| J9880_RS00200 (J9880_00200) | 29351..29752 | - | 402 | WP_232769920.1 | fosfomycin resistance glutathione transferase | - |
| J9880_RS00205 (J9880_00205) | 29892..30113 | + | 222 | WP_232770502.1 | DNA-binding transcriptional regulator | - |
| J9880_RS00210 (J9880_00210) | 30252..31307 | + | 1056 | WP_232769941.1 | tyrosine-type recombinase/integrase | - |
| - | 31377..31466 | - | 90 | - | - | Toxin |
| J9880_RS00215 (J9880_00215) | 31622..31957 | - | 336 | WP_095921404.1 | YebY family protein | - |
| J9880_RS00220 (J9880_00220) | 32008..32892 | - | 885 | WP_095921403.1 | copper homeostasis membrane protein CopD | - |
| J9880_RS00225 (J9880_00225) | 32896..33246 | - | 351 | WP_229921023.1 | copper homeostasis periplasmic binding protein CopC | - |
| J9880_RS00230 (J9880_00230) | 33421..33927 | - | 507 | WP_095921401.1 | non-heme ferritin | - |
| J9880_RS00235 (J9880_00235) | 34335..34565 | + | 231 | WP_013576177.1 | DNA polymerase III subunit theta | - |
| J9880_RS00240 (J9880_00240) | 34585..35541 | - | 957 | WP_095921400.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 892..34565 | 33673 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T229612 NZ_CP089919:c31466-31377 [Rahnella victoriana]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT
Antitoxin
Download Length: 90 bp
>AT229612 NZ_CP089919:31377-31466 [Rahnella victoriana]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
