Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1947789..1947934 | Replicon | chromosome |
| Accession | NZ_CP089884 | ||
| Organism | Klebsiella pneumoniae strain KP102 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947825..1947927 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1947789..1947934 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LR951_RS09520 (LR951_09505) | 1942920..1944980 | + | 2061 | WP_032430257.1 | oligopeptidase B | - |
| LR951_RS09525 (LR951_09510) | 1944984..1945643 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LR951_RS09530 (LR951_09515) | 1945722..1945952 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LR951_RS09535 (LR951_09520) | 1946065..1946439 | + | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| LR951_RS09540 (LR951_09525) | 1946443..1947312 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LR951_RS09545 (LR951_09530) | 1947329..1947667 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1947789..1947934 | - | 146 | - | - | Antitoxin |
| - | 1947825..1947927 | + | 103 | - | - | Toxin |
| LR951_RS09550 (LR951_09535) | 1948302..1948445 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LR951_RS09555 (LR951_09540) | 1948550..1949518 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LR951_RS09560 (LR951_09545) | 1949675..1950328 | + | 654 | WP_021440384.1 | protein-serine/threonine phosphatase | - |
| LR951_RS09565 (LR951_09550) | 1950325..1950516 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LR951_RS09570 (LR951_09555) | 1950614..1950853 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LR951_RS09575 (LR951_09560) | 1950969..1952402 | - | 1434 | WP_023157970.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229595 NZ_CP089884:1947825-1947927 [Klebsiella pneumoniae]
GCAAGGCGATTTTGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTTGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229595 NZ_CP089884:c1947934-1947789 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCAAAATCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCAAAATCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
