Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898443..1898588 | Replicon | chromosome |
| Accession | NZ_CP089882 | ||
| Organism | Klebsiella pneumoniae strain KP059 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1898479..1898581 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898443..1898588 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVQ69_RS09185 (LVQ69_09170) | 1893573..1895633 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVQ69_RS09190 (LVQ69_09175) | 1895637..1896296 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVQ69_RS09195 (LVQ69_09180) | 1896375..1896605 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVQ69_RS09200 (LVQ69_09185) | 1896718..1897092 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVQ69_RS09205 (LVQ69_09190) | 1897096..1897965 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LVQ69_RS09210 (LVQ69_09195) | 1897982..1898320 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1898443..1898588 | - | 146 | - | - | Antitoxin |
| - | 1898479..1898581 | + | 103 | - | - | Toxin |
| LVQ69_RS09215 (LVQ69_09200) | 1898956..1899099 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVQ69_RS09220 (LVQ69_09205) | 1899204..1900172 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVQ69_RS09225 (LVQ69_09210) | 1900329..1900982 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LVQ69_RS09230 (LVQ69_09215) | 1900979..1901170 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVQ69_RS09235 (LVQ69_09220) | 1901268..1901507 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVQ69_RS09240 (LVQ69_09225) | 1901623..1903056 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229576 NZ_CP089882:1898479-1898581 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229576 NZ_CP089882:c1898588-1898443 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
