Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1842223..1842368 | Replicon | chromosome |
| Accession | NZ_CP089880 | ||
| Organism | Klebsiella pneumoniae strain KP309 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1842259..1842361 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1842223..1842368 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVQ72_RS08915 (LVQ72_08910) | 1837353..1839413 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVQ72_RS08920 (LVQ72_08915) | 1839417..1840076 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVQ72_RS08925 (LVQ72_08920) | 1840155..1840385 | - | 231 | WP_048254886.1 | DNA polymerase III subunit theta | - |
| LVQ72_RS08930 (LVQ72_08925) | 1840498..1840872 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVQ72_RS08935 (LVQ72_08930) | 1840876..1841745 | + | 870 | WP_004184661.1 | copper homeostasis membrane protein CopD | - |
| LVQ72_RS08940 (LVQ72_08935) | 1841762..1842100 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1842223..1842368 | - | 146 | - | - | Antitoxin |
| - | 1842259..1842361 | + | 103 | - | - | Toxin |
| LVQ72_RS08945 (LVQ72_08940) | 1842736..1842879 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVQ72_RS08950 (LVQ72_08945) | 1842984..1843952 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LVQ72_RS08955 (LVQ72_08950) | 1844109..1844762 | + | 654 | WP_048254884.1 | protein-serine/threonine phosphatase | - |
| LVQ72_RS08960 (LVQ72_08955) | 1844759..1844950 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVQ72_RS08965 (LVQ72_08960) | 1845048..1845287 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVQ72_RS08970 (LVQ72_08965) | 1845403..1846836 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229555 NZ_CP089880:1842259-1842361 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229555 NZ_CP089880:c1842368-1842223 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
